Hb_005052_020

Information

Type -
Description -
Location Contig5052: 8427-11703
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46039: 10843-11145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005052_020 0.0 - - -
2 Hb_000575_150 0.1256738098 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
3 Hb_143629_040 0.1427720994 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001881_020 0.143001501 - - clathrin binding protein, putative [Ricinus communis]
5 Hb_008103_120 0.143480496 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
6 Hb_011828_020 0.1457634282 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
7 Hb_001102_180 0.1460504046 - - eukaryotic translation initiation factor, putative [Ricinus communis]
8 Hb_000028_140 0.1485744006 - - surfeit locus protein, putative [Ricinus communis]
9 Hb_155764_010 0.1561395188 - - -
10 Hb_000057_200 0.1563791582 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
11 Hb_015292_030 0.1586978681 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
12 Hb_000608_420 0.1591700697 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
13 Hb_007441_230 0.1600831372 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
14 Hb_000777_030 0.1609603708 - - histone h2a, putative [Ricinus communis]
15 Hb_001242_110 0.1610417044 - - 40S ribosomal protein S18, putative [Ricinus communis]
16 Hb_000221_270 0.1610802759 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
17 Hb_000805_020 0.161975771 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
18 Hb_001279_140 0.1627969343 - - PREDICTED: cystinosin homolog [Jatropha curcas]
19 Hb_001155_030 0.1631041448 - - 60S ribosomal protein L10A [Hevea brasiliensis]
20 Hb_006846_110 0.163918068 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]

Gene co-expression network

sample Hb_005052_020 Hb_005052_020 Hb_000575_150 Hb_000575_150 Hb_005052_020--Hb_000575_150 Hb_143629_040 Hb_143629_040 Hb_005052_020--Hb_143629_040 Hb_001881_020 Hb_001881_020 Hb_005052_020--Hb_001881_020 Hb_008103_120 Hb_008103_120 Hb_005052_020--Hb_008103_120 Hb_011828_020 Hb_011828_020 Hb_005052_020--Hb_011828_020 Hb_001102_180 Hb_001102_180 Hb_005052_020--Hb_001102_180 Hb_000777_030 Hb_000777_030 Hb_000575_150--Hb_000777_030 Hb_000805_020 Hb_000805_020 Hb_000575_150--Hb_000805_020 Hb_001969_090 Hb_001969_090 Hb_000575_150--Hb_001969_090 Hb_007747_200 Hb_007747_200 Hb_000575_150--Hb_007747_200 Hb_004452_010 Hb_004452_010 Hb_000575_150--Hb_004452_010 Hb_010883_090 Hb_010883_090 Hb_000575_150--Hb_010883_090 Hb_000051_110 Hb_000051_110 Hb_143629_040--Hb_000051_110 Hb_000221_270 Hb_000221_270 Hb_143629_040--Hb_000221_270 Hb_143629_040--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_143629_040--Hb_020178_070 Hb_001279_140 Hb_001279_140 Hb_143629_040--Hb_001279_140 Hb_000395_080 Hb_000395_080 Hb_143629_040--Hb_000395_080 Hb_000671_150 Hb_000671_150 Hb_001881_020--Hb_000671_150 Hb_021650_030 Hb_021650_030 Hb_001881_020--Hb_021650_030 Hb_000091_090 Hb_000091_090 Hb_001881_020--Hb_000091_090 Hb_001881_020--Hb_020178_070 Hb_002411_200 Hb_002411_200 Hb_001881_020--Hb_002411_200 Hb_000086_570 Hb_000086_570 Hb_001881_020--Hb_000086_570 Hb_003750_080 Hb_003750_080 Hb_008103_120--Hb_003750_080 Hb_000291_110 Hb_000291_110 Hb_008103_120--Hb_000291_110 Hb_093084_060 Hb_093084_060 Hb_008103_120--Hb_093084_060 Hb_005306_130 Hb_005306_130 Hb_008103_120--Hb_005306_130 Hb_181235_010 Hb_181235_010 Hb_008103_120--Hb_181235_010 Hb_000116_480 Hb_000116_480 Hb_008103_120--Hb_000116_480 Hb_011828_020--Hb_000395_080 Hb_000877_060 Hb_000877_060 Hb_011828_020--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_011828_020--Hb_001477_130 Hb_003020_230 Hb_003020_230 Hb_011828_020--Hb_003020_230 Hb_000613_140 Hb_000613_140 Hb_011828_020--Hb_000613_140 Hb_000923_050 Hb_000923_050 Hb_011828_020--Hb_000923_050 Hb_000200_340 Hb_000200_340 Hb_001102_180--Hb_000200_340 Hb_001633_170 Hb_001633_170 Hb_001102_180--Hb_001633_170 Hb_001155_030 Hb_001155_030 Hb_001102_180--Hb_001155_030 Hb_003615_010 Hb_003615_010 Hb_001102_180--Hb_003615_010 Hb_061090_010 Hb_061090_010 Hb_001102_180--Hb_061090_010 Hb_000057_200 Hb_000057_200 Hb_001102_180--Hb_000057_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63871 1.77396 0.284923 0.4369 1.57235 4.69049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.00211 3.6711 3.73376 3.92469 0.387902

CAGE analysis