Hb_005054_010

Information

Type -
Description -
Location Contig5054: 8630-12664
Sequence    

Annotation

kegg
ID rcu:RCOM_0498260
description amino acid transporter, putative
nr
ID XP_002530404.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID P92962
description Proline transporter 2 OS=Arabidopsis thaliana GN=PROT2 PE=1 SV=1
trembl
ID B9SWN5
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0498260 PE=4 SV=1
Gene Ontology
ID GO:0016021
description proline transporter 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46043: 11691-12693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_010 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_002116_020 0.0802576247 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
3 Hb_168031_010 0.0911981954 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
4 Hb_000373_110 0.0956938936 - - Nodulin, putative [Ricinus communis]
5 Hb_006590_040 0.0974373769 - - amino acid permease, putative [Ricinus communis]
6 Hb_007885_120 0.1050438229 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
7 Hb_004125_080 0.1067031963 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
8 Hb_001808_010 0.1112627508 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
9 Hb_111985_090 0.112507686 - - hypothetical protein RCOM_1595950 [Ricinus communis]
10 Hb_006890_050 0.1178341394 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
11 Hb_002411_070 0.1189201663 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
12 Hb_014214_010 0.128041883 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
13 Hb_004007_190 0.1298956092 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
14 Hb_001318_180 0.1313410173 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
15 Hb_003906_150 0.1315711833 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
16 Hb_002374_070 0.1350206874 - - amino acid transporter, putative [Ricinus communis]
17 Hb_000433_060 0.1411283224 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
18 Hb_006816_540 0.1419971719 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
19 Hb_002639_120 0.1434909176 - - unnamed protein product [Vitis vinifera]
20 Hb_023536_020 0.1449796105 - - Nicotianamine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005054_010 Hb_005054_010 Hb_002116_020 Hb_002116_020 Hb_005054_010--Hb_002116_020 Hb_168031_010 Hb_168031_010 Hb_005054_010--Hb_168031_010 Hb_000373_110 Hb_000373_110 Hb_005054_010--Hb_000373_110 Hb_006590_040 Hb_006590_040 Hb_005054_010--Hb_006590_040 Hb_007885_120 Hb_007885_120 Hb_005054_010--Hb_007885_120 Hb_004125_080 Hb_004125_080 Hb_005054_010--Hb_004125_080 Hb_002116_020--Hb_006590_040 Hb_002116_020--Hb_168031_010 Hb_002116_020--Hb_004125_080 Hb_002411_070 Hb_002411_070 Hb_002116_020--Hb_002411_070 Hb_002116_020--Hb_000373_110 Hb_168031_010--Hb_006590_040 Hb_168031_010--Hb_000373_110 Hb_168031_010--Hb_002411_070 Hb_168031_010--Hb_004125_080 Hb_000373_110--Hb_002411_070 Hb_023536_020 Hb_023536_020 Hb_000373_110--Hb_023536_020 Hb_000373_110--Hb_004125_080 Hb_000433_060 Hb_000433_060 Hb_000373_110--Hb_000433_060 Hb_006590_040--Hb_004125_080 Hb_008200_010 Hb_008200_010 Hb_006590_040--Hb_008200_010 Hb_006590_040--Hb_002411_070 Hb_002374_070 Hb_002374_070 Hb_006590_040--Hb_002374_070 Hb_006816_540 Hb_006816_540 Hb_007885_120--Hb_006816_540 Hb_006890_050 Hb_006890_050 Hb_007885_120--Hb_006890_050 Hb_003031_070 Hb_003031_070 Hb_007885_120--Hb_003031_070 Hb_009787_020 Hb_009787_020 Hb_007885_120--Hb_009787_020 Hb_002639_120 Hb_002639_120 Hb_007885_120--Hb_002639_120 Hb_004125_080--Hb_002374_070 Hb_004125_080--Hb_002411_070 Hb_004125_080--Hb_008200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0315205 36.8926 0.997372 60.3087 0.0712716 0.246036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0288795 0 0 1.26857 2.00189

CAGE analysis