Hb_005054_060

Information

Type -
Description -
Location Contig5054: 53919-58912
Sequence    

Annotation

kegg
ID rcu:RCOM_0587330
description Syntaxin-81, putative
nr
ID XP_012086173.1
description PREDICTED: syntaxin-81 [Jatropha curcas]
swissprot
ID P59277
description Syntaxin-81 OS=Arabidopsis thaliana GN=SYP81 PE=1 SV=2
trembl
ID A0A067JQ96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21095 PE=4 SV=1
Gene Ontology
ID GO:0016020
description syntaxin-81-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46051: 53926-58912
cDNA
(Sanger)
(ID:Location)		 011_M07r.ab1: 59082-61035

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_060 0.0 - - PREDICTED: syntaxin-81 [Jatropha curcas]
2 Hb_000815_320 0.0658869504 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
3 Hb_004096_090 0.0708744927 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
4 Hb_003057_090 0.0709190806 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
5 Hb_009694_010 0.0745550732 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001821_010 0.0749042817 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
7 Hb_000465_090 0.0775411879 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
8 Hb_002343_060 0.0808168264 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
9 Hb_001105_030 0.0826319478 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
10 Hb_004108_070 0.0832618514 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
11 Hb_000160_060 0.0848401608 - - unknown [Populus trichocarpa]
12 Hb_010361_010 0.0857423179 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
13 Hb_001195_480 0.0858425052 - - cop9 complex subunit, putative [Ricinus communis]
14 Hb_001341_090 0.086715618 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
15 Hb_000768_170 0.088131218 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
16 Hb_000329_200 0.0892814462 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
17 Hb_000580_090 0.0903583711 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
18 Hb_002168_060 0.0906148336 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
19 Hb_001157_020 0.0918098126 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
20 Hb_003018_010 0.0946983551 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005054_060 Hb_005054_060 Hb_000815_320 Hb_000815_320 Hb_005054_060--Hb_000815_320 Hb_004096_090 Hb_004096_090 Hb_005054_060--Hb_004096_090 Hb_003057_090 Hb_003057_090 Hb_005054_060--Hb_003057_090 Hb_009694_010 Hb_009694_010 Hb_005054_060--Hb_009694_010 Hb_001821_010 Hb_001821_010 Hb_005054_060--Hb_001821_010 Hb_000465_090 Hb_000465_090 Hb_005054_060--Hb_000465_090 Hb_000815_320--Hb_001821_010 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_004096_090--Hb_001195_480 Hb_004116_060 Hb_004116_060 Hb_004096_090--Hb_004116_060 Hb_004096_090--Hb_009694_010 Hb_000633_020 Hb_000633_020 Hb_004096_090--Hb_000633_020 Hb_010222_020 Hb_010222_020 Hb_004096_090--Hb_010222_020 Hb_003057_090--Hb_001195_480 Hb_003057_090--Hb_000815_320 Hb_118419_010 Hb_118419_010 Hb_003057_090--Hb_118419_010 Hb_002168_060 Hb_002168_060 Hb_003057_090--Hb_002168_060 Hb_003057_090--Hb_000580_090 Hb_028227_020 Hb_028227_020 Hb_009694_010--Hb_028227_020 Hb_009694_010--Hb_000465_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_001105_030 Hb_001105_030 Hb_001821_010--Hb_001105_030 Hb_000056_200 Hb_000056_200 Hb_001821_010--Hb_000056_200 Hb_012725_050 Hb_012725_050 Hb_001821_010--Hb_012725_050 Hb_002609_020 Hb_002609_020 Hb_001821_010--Hb_002609_020 Hb_004735_040 Hb_004735_040 Hb_001821_010--Hb_004735_040 Hb_001012_010 Hb_001012_010 Hb_000465_090--Hb_001012_010 Hb_000465_090--Hb_005697_060 Hb_002477_300 Hb_002477_300 Hb_000465_090--Hb_002477_300 Hb_007163_070 Hb_007163_070 Hb_000465_090--Hb_007163_070 Hb_146673_010 Hb_146673_010 Hb_000465_090--Hb_146673_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7703 7.20482 28.1763 20.4307 24.7057 26.3719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.0918 46.7072 27.3358 11.3091 17.3992

CAGE analysis