Hb_005054_070

Information

Type -
Description -
Location Contig5054: 59076-59976
Sequence    

Annotation

kegg
ID vvi:100247882
description immediate early response 3-interacting protein 1-like
nr
ID CBI31551.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q3B8G7
description Immediate early response 3-interacting protein 1 OS=Xenopus laevis GN=ier3ip1 PE=3 SV=1
trembl
ID D7TMI4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46053: 59081-61035
cDNA
(Sanger)
(ID:Location)		 011_M07.ab1: 59081-61035

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_070 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000176_120 0.1007801323 - - seryl-tRNA synthetase, putative [Ricinus communis]
3 Hb_136731_010 0.1119372118 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
4 Hb_032496_030 0.1278997056 - - PREDICTED: WEB family protein At3g02930, chloroplastic [Jatropha curcas]
5 Hb_000001_040 0.1382579634 - - unnamed protein product [Coffea canephora]
6 Hb_004241_040 0.1395572112 - - -
7 Hb_144898_010 0.1399889786 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
8 Hb_073367_010 0.1411354257 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
9 Hb_056199_010 0.1441187191 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
10 Hb_001377_180 0.1461155102 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
11 Hb_005367_010 0.1481392977 - - -
12 Hb_005714_130 0.1503358932 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
13 Hb_001767_120 0.1504883946 - - -
14 Hb_150360_010 0.1549518363 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
15 Hb_000101_090 0.1570901128 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
16 Hb_004117_180 0.1574433797 - - -
17 Hb_004243_010 0.1600024374 - - hypothetical protein JCGZ_01580 [Jatropha curcas]
18 Hb_000161_120 0.161685591 - - unnamed protein product [Vitis vinifera]
19 Hb_010504_030 0.1628634007 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
20 Hb_012305_040 0.1650422957 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]

Gene co-expression network

sample Hb_005054_070 Hb_005054_070 Hb_000176_120 Hb_000176_120 Hb_005054_070--Hb_000176_120 Hb_136731_010 Hb_136731_010 Hb_005054_070--Hb_136731_010 Hb_032496_030 Hb_032496_030 Hb_005054_070--Hb_032496_030 Hb_000001_040 Hb_000001_040 Hb_005054_070--Hb_000001_040 Hb_004241_040 Hb_004241_040 Hb_005054_070--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_005054_070--Hb_144898_010 Hb_006487_060 Hb_006487_060 Hb_000176_120--Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_000176_120--Hb_152554_010 Hb_000176_120--Hb_000001_040 Hb_010504_030 Hb_010504_030 Hb_000176_120--Hb_010504_030 Hb_000176_120--Hb_136731_010 Hb_001377_180 Hb_001377_180 Hb_136731_010--Hb_001377_180 Hb_000155_180 Hb_000155_180 Hb_136731_010--Hb_000155_180 Hb_000812_040 Hb_000812_040 Hb_136731_010--Hb_000812_040 Hb_006502_080 Hb_006502_080 Hb_136731_010--Hb_006502_080 Hb_005367_010 Hb_005367_010 Hb_136731_010--Hb_005367_010 Hb_012132_040 Hb_012132_040 Hb_032496_030--Hb_012132_040 Hb_041392_010 Hb_041392_010 Hb_032496_030--Hb_041392_010 Hb_032496_030--Hb_004241_040 Hb_001341_050 Hb_001341_050 Hb_032496_030--Hb_001341_050 Hb_005784_080 Hb_005784_080 Hb_032496_030--Hb_005784_080 Hb_000265_130 Hb_000265_130 Hb_000001_040--Hb_000265_130 Hb_106005_010 Hb_106005_010 Hb_000001_040--Hb_106005_010 Hb_007188_020 Hb_007188_020 Hb_000001_040--Hb_007188_020 Hb_004117_180 Hb_004117_180 Hb_000001_040--Hb_004117_180 Hb_003581_010 Hb_003581_010 Hb_000001_040--Hb_003581_010 Hb_073367_010 Hb_073367_010 Hb_004241_040--Hb_073367_010 Hb_000622_100 Hb_000622_100 Hb_004241_040--Hb_000622_100 Hb_025236_040 Hb_025236_040 Hb_004241_040--Hb_025236_040 Hb_004662_010 Hb_004662_010 Hb_004241_040--Hb_004662_010 Hb_000107_140 Hb_000107_140 Hb_144898_010--Hb_000107_140 Hb_181320_010 Hb_181320_010 Hb_144898_010--Hb_181320_010 Hb_005305_060 Hb_005305_060 Hb_144898_010--Hb_005305_060 Hb_001722_020 Hb_001722_020 Hb_144898_010--Hb_001722_020 Hb_012807_080 Hb_012807_080 Hb_144898_010--Hb_012807_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.7754 6.68489 32.3718 68.7015 76.7682 264.615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.5048 77.6799 15.0594 26.9463 10.4054

CAGE analysis