Hb_005054_100

Information

Type -
Description -
Location Contig5054: 75789-80337
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20080g
description POPTRDRAFT_822424; hypothetical protein
nr
ID XP_012087984.1
description PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
swissprot
ID O04195
description Uncharacterized protein At2g39920 OS=Arabidopsis thaliana GN=At2g39920 PE=2 SV=2
trembl
ID A0A067LC86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01333 PE=4 SV=1
Gene Ontology
ID GO:0003993
description had isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46062: 77327-78036 , PASA_asmbl_46063: 75787-80301 , PASA_asmbl_46064: 78536-78725
cDNA
(Sanger)
(ID:Location)		 016_N07.ab1: 78378-80288 , 025_H23.ab1: 78299-80288 , 053_C09.ab1: 78350-80301

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_100 0.0 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
2 Hb_002811_060 0.0523998041 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
3 Hb_002740_180 0.059519477 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012022_090 0.0705865357 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
5 Hb_000169_090 0.0709576238 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
6 Hb_005490_030 0.0721311979 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
7 Hb_023001_060 0.0740907193 - - PREDICTED: importin-11 [Jatropha curcas]
8 Hb_001344_010 0.0801165569 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
9 Hb_003777_310 0.0804062728 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001691_120 0.0809144943 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
11 Hb_000318_290 0.0829746572 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
12 Hb_000832_020 0.085279678 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
13 Hb_009548_020 0.0855452422 - - structural constituent of cell wall, putative [Ricinus communis]
14 Hb_000300_050 0.086551982 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002716_130 0.0868680302 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
16 Hb_002217_300 0.0869498738 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
17 Hb_000608_320 0.0874241409 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
18 Hb_000032_100 0.0880188681 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
19 Hb_002942_100 0.0883149061 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
20 Hb_172632_080 0.088491363 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_005054_100 Hb_005054_100 Hb_002811_060 Hb_002811_060 Hb_005054_100--Hb_002811_060 Hb_002740_180 Hb_002740_180 Hb_005054_100--Hb_002740_180 Hb_012022_090 Hb_012022_090 Hb_005054_100--Hb_012022_090 Hb_000169_090 Hb_000169_090 Hb_005054_100--Hb_000169_090 Hb_005490_030 Hb_005490_030 Hb_005054_100--Hb_005490_030 Hb_023001_060 Hb_023001_060 Hb_005054_100--Hb_023001_060 Hb_002811_060--Hb_012022_090 Hb_000116_500 Hb_000116_500 Hb_002811_060--Hb_000116_500 Hb_003988_010 Hb_003988_010 Hb_002811_060--Hb_003988_010 Hb_000608_320 Hb_000608_320 Hb_002811_060--Hb_000608_320 Hb_006660_010 Hb_006660_010 Hb_002811_060--Hb_006660_010 Hb_000185_040 Hb_000185_040 Hb_002740_180--Hb_000185_040 Hb_054865_150 Hb_054865_150 Hb_002740_180--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_002740_180--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_002740_180--Hb_000318_290 Hb_000028_480 Hb_000028_480 Hb_002740_180--Hb_000028_480 Hb_000213_010 Hb_000213_010 Hb_012022_090--Hb_000213_010 Hb_012022_090--Hb_000116_500 Hb_009548_020 Hb_009548_020 Hb_012022_090--Hb_009548_020 Hb_001143_160 Hb_001143_160 Hb_012022_090--Hb_001143_160 Hb_002942_100 Hb_002942_100 Hb_012022_090--Hb_002942_100 Hb_004046_020 Hb_004046_020 Hb_000169_090--Hb_004046_020 Hb_001344_010 Hb_001344_010 Hb_000169_090--Hb_001344_010 Hb_003195_070 Hb_003195_070 Hb_000169_090--Hb_003195_070 Hb_000898_040 Hb_000898_040 Hb_000169_090--Hb_000898_040 Hb_003206_070 Hb_003206_070 Hb_000169_090--Hb_003206_070 Hb_001009_170 Hb_001009_170 Hb_005490_030--Hb_001009_170 Hb_005490_030--Hb_001344_010 Hb_005490_030--Hb_023001_060 Hb_000172_290 Hb_000172_290 Hb_005490_030--Hb_000172_290 Hb_000749_220 Hb_000749_220 Hb_005490_030--Hb_000749_220 Hb_023001_060--Hb_001344_010 Hb_003777_310 Hb_003777_310 Hb_023001_060--Hb_003777_310 Hb_003697_030 Hb_003697_030 Hb_023001_060--Hb_003697_030 Hb_023001_060--Hb_000318_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0963 8.67797 5.82485 16.0432 18.1787 23.279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1083 10.7534 22.2073 16.2568 13.4872

CAGE analysis