Hb_005054_110

Information

Type -
Description -
Location Contig5054: 81776-87572
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20070g
description POPTRDRAFT_1091918; hypothetical protein
nr
ID XP_012087962.1
description PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
swissprot
ID Q9I0K9
description Adenylosuccinate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=purB PE=3 SV=1
trembl
ID A0A067L8V9
description Adenylosuccinate lyase OS=Jatropha curcas GN=JCGZ_01332 PE=3 SV=1
Gene Ontology
ID GO:0004018
description adenylosuccinate lyase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46065: 81947-87396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_110 0.0 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
2 Hb_011386_010 0.0385698512 - - mitochondrial carrier protein, putative [Ricinus communis]
3 Hb_000049_210 0.0506038452 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
4 Hb_000260_350 0.0551057471 - - conserved hypothetical protein [Ricinus communis]
5 Hb_149985_010 0.055634233 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
6 Hb_019863_070 0.0606807436 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
7 Hb_001304_110 0.0629206788 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
8 Hb_156279_020 0.0629385032 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
9 Hb_002078_350 0.0634302272 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
10 Hb_002450_020 0.0638309848 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
11 Hb_002518_260 0.0641139202 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
12 Hb_065525_040 0.0641865688 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
13 Hb_000856_010 0.0656278315 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
14 Hb_009486_140 0.065703037 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
15 Hb_000574_450 0.0664556959 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
16 Hb_000078_120 0.066456799 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
17 Hb_007479_040 0.0667027256 - - conserved hypothetical protein [Ricinus communis]
18 Hb_093458_040 0.0673705354 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
19 Hb_001016_120 0.0689366331 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
20 Hb_012022_040 0.0695087967 - - Protein SIS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_005054_110 Hb_005054_110 Hb_011386_010 Hb_011386_010 Hb_005054_110--Hb_011386_010 Hb_000049_210 Hb_000049_210 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_149985_010 Hb_149985_010 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110 Hb_002078_350 Hb_002078_350 Hb_011386_010--Hb_002078_350 Hb_000329_710 Hb_000329_710 Hb_011386_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_011386_010--Hb_002518_260 Hb_156279_020 Hb_156279_020 Hb_011386_010--Hb_156279_020 Hb_000792_010 Hb_000792_010 Hb_011386_010--Hb_000792_010 Hb_000710_060 Hb_000710_060 Hb_000049_210--Hb_000710_060 Hb_000049_210--Hb_149985_010 Hb_000890_150 Hb_000890_150 Hb_000049_210--Hb_000890_150 Hb_008725_230 Hb_008725_230 Hb_000049_210--Hb_008725_230 Hb_003847_030 Hb_003847_030 Hb_000049_210--Hb_003847_030 Hb_001511_060 Hb_001511_060 Hb_000260_350--Hb_001511_060 Hb_000349_260 Hb_000349_260 Hb_000260_350--Hb_000349_260 Hb_004990_010 Hb_004990_010 Hb_000260_350--Hb_004990_010 Hb_093458_040 Hb_093458_040 Hb_000260_350--Hb_093458_040 Hb_168978_010 Hb_168978_010 Hb_000260_350--Hb_168978_010 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_000359_060 Hb_000359_060 Hb_149985_010--Hb_000359_060 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_002818_030 Hb_002818_030 Hb_019863_070--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_019863_070--Hb_003849_110 Hb_000868_090 Hb_000868_090 Hb_019863_070--Hb_000868_090 Hb_000258_160 Hb_000258_160 Hb_019863_070--Hb_000258_160 Hb_015807_150 Hb_015807_150 Hb_019863_070--Hb_015807_150 Hb_005582_040 Hb_005582_040 Hb_001304_110--Hb_005582_040 Hb_010068_080 Hb_010068_080 Hb_001304_110--Hb_010068_080 Hb_005686_090 Hb_005686_090 Hb_001304_110--Hb_005686_090 Hb_001999_290 Hb_001999_290 Hb_001304_110--Hb_001999_290 Hb_001304_110--Hb_011386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.64675 5.56306 4.72703 6.50678 4.24904 5.4573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.05987 7.36347 7.64134 6.43707 6.861

CAGE analysis