Hb_005054_120

Information

Type -
Description -
Location Contig5054: 88660-91481
Sequence    

Annotation

kegg
ID rcu:RCOM_0498670
description sedoheptulose-1,7-bisphosphatase, chloroplast, putative (EC:3.1.3.37)
nr
ID XP_012087973.1
description PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
swissprot
ID O20252
description Sedoheptulose-1,7-bisphosphatase, chloroplastic OS=Spinacia oleracea PE=2 SV=1
trembl
ID A0A067L8Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01331 PE=3 SV=1
Gene Ontology
ID GO:0009570
description sedoheptulose- - chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46066: 88667-91467
cDNA
(Sanger)
(ID:Location)		 013_N04.ab1: 88670-90334

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_120 0.0 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
2 Hb_002852_010 0.04895842 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_001007_070 0.0522248549 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
4 Hb_005063_030 0.0603326797 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_001564_120 0.0646347886 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
6 Hb_002259_090 0.0683811065 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
7 Hb_001999_230 0.0688559678 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
8 Hb_001699_140 0.0694792155 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
9 Hb_001975_100 0.0716295498 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
10 Hb_000099_120 0.0725252083 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
11 Hb_000098_040 0.0725371866 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
12 Hb_000373_160 0.07362384 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
13 Hb_000077_380 0.0739496942 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
14 Hb_000101_330 0.0761067143 - - -
15 Hb_000254_130 0.0761446006 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
16 Hb_009193_070 0.0769770604 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
17 Hb_025557_060 0.0792067981 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
18 Hb_000906_080 0.0793274539 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_002368_060 0.079573262 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000826_010 0.0821753544 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005054_120 Hb_005054_120 Hb_002852_010 Hb_002852_010 Hb_005054_120--Hb_002852_010 Hb_001007_070 Hb_001007_070 Hb_005054_120--Hb_001007_070 Hb_005063_030 Hb_005063_030 Hb_005054_120--Hb_005063_030 Hb_001564_120 Hb_001564_120 Hb_005054_120--Hb_001564_120 Hb_002259_090 Hb_002259_090 Hb_005054_120--Hb_002259_090 Hb_001999_230 Hb_001999_230 Hb_005054_120--Hb_001999_230 Hb_000077_380 Hb_000077_380 Hb_002852_010--Hb_000077_380 Hb_002852_010--Hb_002259_090 Hb_003494_090 Hb_003494_090 Hb_002852_010--Hb_003494_090 Hb_001699_140 Hb_001699_140 Hb_002852_010--Hb_001699_140 Hb_002852_010--Hb_005063_030 Hb_001007_070--Hb_001999_230 Hb_000099_120 Hb_000099_120 Hb_001007_070--Hb_000099_120 Hb_001007_070--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_001007_070--Hb_009193_070 Hb_000254_130 Hb_000254_130 Hb_001007_070--Hb_000254_130 Hb_001975_100 Hb_001975_100 Hb_005063_030--Hb_001975_100 Hb_005063_030--Hb_001564_120 Hb_005063_030--Hb_000254_130 Hb_000101_330 Hb_000101_330 Hb_005063_030--Hb_000101_330 Hb_001292_030 Hb_001292_030 Hb_005063_030--Hb_001292_030 Hb_005063_030--Hb_001999_230 Hb_000098_040 Hb_000098_040 Hb_001564_120--Hb_000098_040 Hb_001564_120--Hb_001999_230 Hb_001564_120--Hb_001975_100 Hb_001564_120--Hb_000099_120 Hb_001564_120--Hb_001007_070 Hb_008847_050 Hb_008847_050 Hb_002259_090--Hb_008847_050 Hb_003025_160 Hb_003025_160 Hb_002259_090--Hb_003025_160 Hb_002259_090--Hb_001999_230 Hb_001277_130 Hb_001277_130 Hb_002259_090--Hb_001277_130 Hb_001999_230--Hb_000254_130 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001999_230--Hb_001975_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0283885 41.7139 187.199 120.776 0 0.0963955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.614577 0.381708 0 2.76402 398.226

CAGE analysis