Hb_005054_180

Information

Type -
Description -
Location Contig5054: 121497-126042
Sequence    

Annotation

kegg
ID tcc:TCM_042602
description RNI-like superfamily protein
nr
ID ABV72393.1
description coronatine-insensitive 1 [Hevea brasiliensis]
swissprot
ID O04197
description Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1
trembl
ID A8HSC8
description Coronatine-insensitive 1 OS=Hevea brasiliensis GN=COI1 PE=2 SV=1
Gene Ontology
ID GO:0019005
description coronatine-insensitive protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46068: 121554-126034
cDNA
(Sanger)
(ID:Location)		 042_L06.ab1: 125285-125898 , 052_B08.ab1: 125356-126029

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_180 0.0 - - coronatine-insensitive 1 [Hevea brasiliensis]
2 Hb_000072_220 0.0765265573 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
3 Hb_000165_250 0.0895620987 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
4 Hb_000661_050 0.0896470034 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
5 Hb_001245_070 0.0911455599 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
6 Hb_001019_230 0.0913978741 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
7 Hb_008643_210 0.0923289449 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
8 Hb_003609_030 0.0925967869 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
9 Hb_003938_080 0.0926190398 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
10 Hb_001213_050 0.0931465983 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
11 Hb_000029_050 0.0942685246 - - expressed protein, putative [Ricinus communis]
12 Hb_005993_050 0.0957596442 - - Protein AFR, putative [Ricinus communis]
13 Hb_000101_240 0.0958280067 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
14 Hb_000502_050 0.0961772916 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
15 Hb_001736_040 0.0972637994 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
16 Hb_000107_500 0.0974231746 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
17 Hb_001097_050 0.0979544428 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001675_180 0.0995451133 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
19 Hb_001301_200 0.0997617509 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
20 Hb_000174_220 0.1002878885 - - cohesin subunit rad21, putative [Ricinus communis]

Gene co-expression network

sample Hb_005054_180 Hb_005054_180 Hb_000072_220 Hb_000072_220 Hb_005054_180--Hb_000072_220 Hb_000165_250 Hb_000165_250 Hb_005054_180--Hb_000165_250 Hb_000661_050 Hb_000661_050 Hb_005054_180--Hb_000661_050 Hb_001245_070 Hb_001245_070 Hb_005054_180--Hb_001245_070 Hb_001019_230 Hb_001019_230 Hb_005054_180--Hb_001019_230 Hb_008643_210 Hb_008643_210 Hb_005054_180--Hb_008643_210 Hb_004221_020 Hb_004221_020 Hb_000072_220--Hb_004221_020 Hb_002835_370 Hb_002835_370 Hb_000072_220--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_000072_220--Hb_010139_040 Hb_172632_080 Hb_172632_080 Hb_000072_220--Hb_172632_080 Hb_009548_020 Hb_009548_020 Hb_000072_220--Hb_009548_020 Hb_001675_180 Hb_001675_180 Hb_000072_220--Hb_001675_180 Hb_000029_050 Hb_000029_050 Hb_000165_250--Hb_000029_050 Hb_000165_250--Hb_004221_020 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_017358_030 Hb_017358_030 Hb_000165_250--Hb_017358_030 Hb_005496_130 Hb_005496_130 Hb_000165_250--Hb_005496_130 Hb_000291_050 Hb_000291_050 Hb_000165_250--Hb_000291_050 Hb_001736_040 Hb_001736_040 Hb_000661_050--Hb_001736_040 Hb_002307_100 Hb_002307_100 Hb_000661_050--Hb_002307_100 Hb_000317_020 Hb_000317_020 Hb_000661_050--Hb_000317_020 Hb_004724_200 Hb_004724_200 Hb_000661_050--Hb_004724_200 Hb_000244_250 Hb_000244_250 Hb_000661_050--Hb_000244_250 Hb_004934_090 Hb_004934_090 Hb_000661_050--Hb_004934_090 Hb_124315_020 Hb_124315_020 Hb_001245_070--Hb_124315_020 Hb_001245_070--Hb_000661_050 Hb_175338_030 Hb_175338_030 Hb_001245_070--Hb_175338_030 Hb_000453_170 Hb_000453_170 Hb_001245_070--Hb_000453_170 Hb_000392_300 Hb_000392_300 Hb_001245_070--Hb_000392_300 Hb_001245_070--Hb_000244_250 Hb_004096_030 Hb_004096_030 Hb_001019_230--Hb_004096_030 Hb_001019_230--Hb_004934_090 Hb_154745_010 Hb_154745_010 Hb_001019_230--Hb_154745_010 Hb_004447_060 Hb_004447_060 Hb_001019_230--Hb_004447_060 Hb_001019_230--Hb_000661_050 Hb_001862_190 Hb_001862_190 Hb_001019_230--Hb_001862_190 Hb_016172_020 Hb_016172_020 Hb_008643_210--Hb_016172_020 Hb_002045_240 Hb_002045_240 Hb_008643_210--Hb_002045_240 Hb_004841_010 Hb_004841_010 Hb_008643_210--Hb_004841_010 Hb_000060_090 Hb_000060_090 Hb_008643_210--Hb_000060_090 Hb_023386_020 Hb_023386_020 Hb_008643_210--Hb_023386_020 Hb_000010_330 Hb_000010_330 Hb_008643_210--Hb_000010_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
185.445 127.056 45.424 81.3215 136.9 189.059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.022 99.7364 146.696 50.674 115.589

CAGE analysis