Hb_005054_210

Information

Type -
Description -
Location Contig5054: 158223-162221
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa026456mg
description hypothetical protein
nr
ID XP_007219803.1
description hypothetical protein PRUPE_ppa026456mg [Prunus persica]
swissprot
ID P58684
description Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana GN=At2g39960 PE=2 SV=1
trembl
ID M5X4M9
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026456mg PE=4 SV=1
Gene Ontology
ID GO:0005783
description probable signal peptidase complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46075: 158336-158892 , PASA_asmbl_46077: 161473-161706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_210 0.0 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
2 Hb_003622_040 0.071075038 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
3 Hb_000174_210 0.0727263419 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
4 Hb_005765_050 0.0746716544 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
5 Hb_148121_040 0.0771823654 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
6 Hb_076233_040 0.0810547506 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
7 Hb_000045_310 0.0816822527 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
8 Hb_002014_020 0.0819842142 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
9 Hb_026889_030 0.0846459914 - - protein with unknown function [Ricinus communis]
10 Hb_000920_200 0.0848489483 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
11 Hb_006573_190 0.0853214874 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
12 Hb_001218_030 0.0866128174 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
13 Hb_000317_390 0.0890604182 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
14 Hb_001828_150 0.0902407265 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
15 Hb_006420_080 0.0914595121 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_004696_080 0.091959595 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
17 Hb_028396_010 0.0928493956 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
18 Hb_000599_250 0.0929529161 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
19 Hb_008841_020 0.092967756 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
20 Hb_001195_060 0.0932573862 - - Protein yrdA, putative [Ricinus communis]

Gene co-expression network

sample Hb_005054_210 Hb_005054_210 Hb_003622_040 Hb_003622_040 Hb_005054_210--Hb_003622_040 Hb_000174_210 Hb_000174_210 Hb_005054_210--Hb_000174_210 Hb_005765_050 Hb_005765_050 Hb_005054_210--Hb_005765_050 Hb_148121_040 Hb_148121_040 Hb_005054_210--Hb_148121_040 Hb_076233_040 Hb_076233_040 Hb_005054_210--Hb_076233_040 Hb_000045_310 Hb_000045_310 Hb_005054_210--Hb_000045_310 Hb_001123_160 Hb_001123_160 Hb_003622_040--Hb_001123_160 Hb_000934_190 Hb_000934_190 Hb_003622_040--Hb_000934_190 Hb_000300_430 Hb_000300_430 Hb_003622_040--Hb_000300_430 Hb_008232_010 Hb_008232_010 Hb_003622_040--Hb_008232_010 Hb_011344_190 Hb_011344_190 Hb_003622_040--Hb_011344_190 Hb_002014_020 Hb_002014_020 Hb_000174_210--Hb_002014_020 Hb_000174_210--Hb_003622_040 Hb_007894_170 Hb_007894_170 Hb_000174_210--Hb_007894_170 Hb_000665_050 Hb_000665_050 Hb_000174_210--Hb_000665_050 Hb_006420_080 Hb_006420_080 Hb_000174_210--Hb_006420_080 Hb_000173_410 Hb_000173_410 Hb_005765_050--Hb_000173_410 Hb_000608_050 Hb_000608_050 Hb_005765_050--Hb_000608_050 Hb_001300_150 Hb_001300_150 Hb_005765_050--Hb_001300_150 Hb_000454_090 Hb_000454_090 Hb_005765_050--Hb_000454_090 Hb_008841_020 Hb_008841_020 Hb_005765_050--Hb_008841_020 Hb_004078_040 Hb_004078_040 Hb_005765_050--Hb_004078_040 Hb_148121_040--Hb_000608_050 Hb_000638_250 Hb_000638_250 Hb_148121_040--Hb_000638_250 Hb_004696_080 Hb_004696_080 Hb_148121_040--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_148121_040--Hb_152784_010 Hb_000403_060 Hb_000403_060 Hb_148121_040--Hb_000403_060 Hb_076233_040--Hb_008841_020 Hb_003126_070 Hb_003126_070 Hb_076233_040--Hb_003126_070 Hb_000329_210 Hb_000329_210 Hb_076233_040--Hb_000329_210 Hb_010883_050 Hb_010883_050 Hb_076233_040--Hb_010883_050 Hb_076233_040--Hb_006420_080 Hb_000566_120 Hb_000566_120 Hb_000045_310--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_000045_310--Hb_028396_010 Hb_006573_190 Hb_006573_190 Hb_000045_310--Hb_006573_190 Hb_024650_070 Hb_024650_070 Hb_000045_310--Hb_024650_070 Hb_008071_020 Hb_008071_020 Hb_000045_310--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_000045_310--Hb_001931_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6442 7.15307 26.3151 33.4973 15.0906 14.3746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.9027 34.8793 36.6199 23.5304 18.2387

CAGE analysis