Hb_005054_220

Information

Type -
Description -
Location Contig5054: 163844-169231
Sequence    

Annotation

kegg
ID rcu:RCOM_0591310
description peroxisomal membrane protein pmp34, putative
nr
ID XP_012087878.1
description PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
swissprot
ID O04200
description Peroxisomal nicotinamide adenine dinucleotide carrier OS=Arabidopsis thaliana GN=PXN PE=1 SV=1
trembl
ID A0A067LJJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01325 PE=3 SV=1
Gene Ontology
ID GO:0005774
description peroxisomal membrane protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46079: 167384-167529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_220 0.0 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
2 Hb_007390_020 0.1156721305 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
3 Hb_004117_190 0.118244106 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
4 Hb_005754_040 0.1212872858 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
5 Hb_003540_050 0.1254896836 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
6 Hb_004055_050 0.1261880543 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
7 Hb_000539_050 0.1262638182 - - bile acid:sodium symporter, putative [Ricinus communis]
8 Hb_000152_600 0.126892986 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
9 Hb_002193_060 0.1268980998 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
10 Hb_000072_300 0.1272391874 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
11 Hb_185830_060 0.1317693073 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
12 Hb_002740_080 0.1332769808 - - flap endonuclease-1, putative [Ricinus communis]
13 Hb_010368_050 0.1373151803 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
14 Hb_081599_010 0.1374138765 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000160_070 0.1381695572 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
16 Hb_000665_180 0.1389846017 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
17 Hb_133004_010 0.1391532753 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
18 Hb_011671_120 0.1393095671 - - hypothetical protein JCGZ_26275 [Jatropha curcas]
19 Hb_015099_030 0.1397723943 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
20 Hb_000007_090 0.1398057099 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005054_220 Hb_005054_220 Hb_007390_020 Hb_007390_020 Hb_005054_220--Hb_007390_020 Hb_004117_190 Hb_004117_190 Hb_005054_220--Hb_004117_190 Hb_005754_040 Hb_005754_040 Hb_005054_220--Hb_005754_040 Hb_003540_050 Hb_003540_050 Hb_005054_220--Hb_003540_050 Hb_004055_050 Hb_004055_050 Hb_005054_220--Hb_004055_050 Hb_000539_050 Hb_000539_050 Hb_005054_220--Hb_000539_050 Hb_019181_030 Hb_019181_030 Hb_007390_020--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_007390_020--Hb_000152_600 Hb_000913_040 Hb_000913_040 Hb_007390_020--Hb_000913_040 Hb_004176_070 Hb_004176_070 Hb_007390_020--Hb_004176_070 Hb_010368_050 Hb_010368_050 Hb_007390_020--Hb_010368_050 Hb_000580_100 Hb_000580_100 Hb_004117_190--Hb_000580_100 Hb_007741_130 Hb_007741_130 Hb_004117_190--Hb_007741_130 Hb_101146_010 Hb_101146_010 Hb_004117_190--Hb_101146_010 Hb_004117_190--Hb_003540_050 Hb_001268_340 Hb_001268_340 Hb_004117_190--Hb_001268_340 Hb_000395_280 Hb_000395_280 Hb_005754_040--Hb_000395_280 Hb_003605_020 Hb_003605_020 Hb_005754_040--Hb_003605_020 Hb_002676_120 Hb_002676_120 Hb_005754_040--Hb_002676_120 Hb_006775_120 Hb_006775_120 Hb_005754_040--Hb_006775_120 Hb_000072_300 Hb_000072_300 Hb_005754_040--Hb_000072_300 Hb_000684_030 Hb_000684_030 Hb_005754_040--Hb_000684_030 Hb_003540_050--Hb_000072_300 Hb_002686_080 Hb_002686_080 Hb_003540_050--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_003540_050--Hb_005064_010 Hb_001053_190 Hb_001053_190 Hb_003540_050--Hb_001053_190 Hb_001279_190 Hb_001279_190 Hb_003540_050--Hb_001279_190 Hb_002740_080 Hb_002740_080 Hb_003540_050--Hb_002740_080 Hb_000622_110 Hb_000622_110 Hb_004055_050--Hb_000622_110 Hb_001250_050 Hb_001250_050 Hb_004055_050--Hb_001250_050 Hb_005535_080 Hb_005535_080 Hb_004055_050--Hb_005535_080 Hb_081599_010 Hb_081599_010 Hb_004055_050--Hb_081599_010 Hb_003777_030 Hb_003777_030 Hb_004055_050--Hb_003777_030 Hb_000665_170 Hb_000665_170 Hb_004055_050--Hb_000665_170 Hb_002218_030 Hb_002218_030 Hb_000539_050--Hb_002218_030 Hb_001022_030 Hb_001022_030 Hb_000539_050--Hb_001022_030 Hb_093666_010 Hb_093666_010 Hb_000539_050--Hb_093666_010 Hb_000907_180 Hb_000907_180 Hb_000539_050--Hb_000907_180 Hb_009225_020 Hb_009225_020 Hb_000539_050--Hb_009225_020 Hb_077549_010 Hb_077549_010 Hb_000539_050--Hb_077549_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91853 1.89065 7.30943 9.7269 1.04538 3.19402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85657 3.58359 1.03332 4.25173 4.45273

CAGE analysis