Hb_005054_230

Information

Type -
Description -
Location Contig5054: 172315-173235
Sequence    

Annotation

kegg
ID rcu:RCOM_0591430
description protein with unknown function
nr
ID XP_012087865.1
description PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LC80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01323 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46080: 172211-173431
cDNA
(Sanger)
(ID:Location)		 027_K01.ab1: 172312-172830 , 045_A12.ab1: 172288-173065 , 047_H20.ab1: 172288-172952 , 047_O03.ab1: 172265-173002 , 048_G02.ab1: 172211-172922

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_230 0.0 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
2 Hb_002107_030 0.0649437422 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
3 Hb_001369_730 0.0754759619 - - F5O11.10, putative isoform 1 [Theobroma cacao]
4 Hb_000930_030 0.0812795383 - - PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
5 Hb_000009_090 0.0820769853 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
6 Hb_002890_290 0.083380301 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
7 Hb_005116_160 0.0841968594 transcription factor TF Family: TRAF -
8 Hb_021443_040 0.0847672123 - - acc synthase, putative [Ricinus communis]
9 Hb_000521_080 0.0849148023 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
10 Hb_001114_140 0.0858797448 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
11 Hb_167498_010 0.087021265 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
12 Hb_000202_040 0.0914618495 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
13 Hb_000699_030 0.09173693 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
14 Hb_003158_010 0.0920544709 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
15 Hb_002141_030 0.0926936788 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000732_010 0.093098287 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
17 Hb_000329_470 0.0931149108 - - ccr4-not transcription complex, putative [Ricinus communis]
18 Hb_004619_030 0.0942094404 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
19 Hb_001500_050 0.0945860307 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
20 Hb_001390_110 0.0948986354 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]

Gene co-expression network

sample Hb_005054_230 Hb_005054_230 Hb_002107_030 Hb_002107_030 Hb_005054_230--Hb_002107_030 Hb_001369_730 Hb_001369_730 Hb_005054_230--Hb_001369_730 Hb_000930_030 Hb_000930_030 Hb_005054_230--Hb_000930_030 Hb_000009_090 Hb_000009_090 Hb_005054_230--Hb_000009_090 Hb_002890_290 Hb_002890_290 Hb_005054_230--Hb_002890_290 Hb_005116_160 Hb_005116_160 Hb_005054_230--Hb_005116_160 Hb_000329_470 Hb_000329_470 Hb_002107_030--Hb_000329_470 Hb_006913_030 Hb_006913_030 Hb_002107_030--Hb_006913_030 Hb_167498_010 Hb_167498_010 Hb_002107_030--Hb_167498_010 Hb_003050_220 Hb_003050_220 Hb_002107_030--Hb_003050_220 Hb_003158_010 Hb_003158_010 Hb_002107_030--Hb_003158_010 Hb_001369_730--Hb_167498_010 Hb_001369_730--Hb_000329_470 Hb_001409_020 Hb_001409_020 Hb_001369_730--Hb_001409_020 Hb_001198_100 Hb_001198_100 Hb_001369_730--Hb_001198_100 Hb_000732_010 Hb_000732_010 Hb_001369_730--Hb_000732_010 Hb_004800_080 Hb_004800_080 Hb_001369_730--Hb_004800_080 Hb_002232_410 Hb_002232_410 Hb_000930_030--Hb_002232_410 Hb_000930_030--Hb_000732_010 Hb_000002_340 Hb_000002_340 Hb_000930_030--Hb_000002_340 Hb_010519_050 Hb_010519_050 Hb_000930_030--Hb_010519_050 Hb_005271_220 Hb_005271_220 Hb_000930_030--Hb_005271_220 Hb_003794_010 Hb_003794_010 Hb_000009_090--Hb_003794_010 Hb_000160_210 Hb_000160_210 Hb_000009_090--Hb_000160_210 Hb_005993_050 Hb_005993_050 Hb_000009_090--Hb_005993_050 Hb_007007_060 Hb_007007_060 Hb_000009_090--Hb_007007_060 Hb_000853_230 Hb_000853_230 Hb_000009_090--Hb_000853_230 Hb_001227_030 Hb_001227_030 Hb_002890_290--Hb_001227_030 Hb_005489_020 Hb_005489_020 Hb_002890_290--Hb_005489_020 Hb_000331_680 Hb_000331_680 Hb_002890_290--Hb_000331_680 Hb_000025_410 Hb_000025_410 Hb_002890_290--Hb_000025_410 Hb_152175_010 Hb_152175_010 Hb_002890_290--Hb_152175_010 Hb_003464_090 Hb_003464_090 Hb_002890_290--Hb_003464_090 Hb_000684_470 Hb_000684_470 Hb_005116_160--Hb_000684_470 Hb_000699_030 Hb_000699_030 Hb_005116_160--Hb_000699_030 Hb_005116_160--Hb_000732_010 Hb_001307_220 Hb_001307_220 Hb_005116_160--Hb_001307_220 Hb_005116_160--Hb_001369_730 Hb_005463_100 Hb_005463_100 Hb_005116_160--Hb_005463_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
113.809 70.9839 48.6205 60.1701 74.0312 57.1295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.633 67.1877 68.0314 65.5544 73.4173

CAGE analysis