Hb_005054_260

Information

Type -
Description -
Location Contig5054: 201958-206073
Sequence    

Annotation

kegg
ID gmx:100790393
description 26S proteasome non-ATPase regulatory subunit 7 homolog A-like
nr
ID XP_012087822.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
swissprot
ID O24412
description 26S proteasome non-ATPase regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPN8A PE=1 SV=1
trembl
ID A0A067LKH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01319 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 7 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46083: 201936-205999
cDNA
(Sanger)
(ID:Location)		 006_N07.ab1: 204232-205979 , 025_F10.ab1: 203259-205979 , 026_A05.ab1: 204663-205976

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_260 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
2 Hb_000739_140 0.0752162047 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
3 Hb_009075_010 0.0767191261 - - 60S ribosomal protein L10B [Hevea brasiliensis]
4 Hb_001979_020 0.080959662 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
5 Hb_003020_150 0.1093191982 - - tropinone reductase, putative [Ricinus communis]
6 Hb_000384_120 0.1098382809 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
7 Hb_000163_050 0.1099696969 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
8 Hb_002016_080 0.1128472482 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
9 Hb_000056_250 0.1135723745 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
10 Hb_130719_010 0.1138376615 - - V-type proton ATPase subunit E [Hevea brasiliensis]
11 Hb_007441_260 0.1139713151 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
12 Hb_011485_020 0.1180176415 - - protein with unknown function [Ricinus communis]
13 Hb_000815_290 0.1199591689 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
14 Hb_005496_090 0.1227755266 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
15 Hb_001240_020 0.1228079084 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
16 Hb_001053_140 0.1230029215 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
17 Hb_138585_040 0.124013265 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
18 Hb_003880_030 0.1249869801 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
19 Hb_001410_060 0.1261801372 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
20 Hb_000320_330 0.1273494072 - - uncharacterized protein LOC100527884 [Glycine max]

Gene co-expression network

sample Hb_005054_260 Hb_005054_260 Hb_000739_140 Hb_000739_140 Hb_005054_260--Hb_000739_140 Hb_009075_010 Hb_009075_010 Hb_005054_260--Hb_009075_010 Hb_001979_020 Hb_001979_020 Hb_005054_260--Hb_001979_020 Hb_003020_150 Hb_003020_150 Hb_005054_260--Hb_003020_150 Hb_000384_120 Hb_000384_120 Hb_005054_260--Hb_000384_120 Hb_000163_050 Hb_000163_050 Hb_005054_260--Hb_000163_050 Hb_000739_140--Hb_009075_010 Hb_005306_070 Hb_005306_070 Hb_000739_140--Hb_005306_070 Hb_000768_130 Hb_000768_130 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_001410_060 Hb_001410_060 Hb_000739_140--Hb_001410_060 Hb_009075_010--Hb_000163_050 Hb_009075_010--Hb_001979_020 Hb_000896_040 Hb_000896_040 Hb_009075_010--Hb_000896_040 Hb_000377_120 Hb_000377_120 Hb_009075_010--Hb_000377_120 Hb_002232_060 Hb_002232_060 Hb_001979_020--Hb_002232_060 Hb_001979_020--Hb_003020_150 Hb_003880_030 Hb_003880_030 Hb_001979_020--Hb_003880_030 Hb_000072_200 Hb_000072_200 Hb_001979_020--Hb_000072_200 Hb_001979_020--Hb_000384_120 Hb_003020_150--Hb_000163_050 Hb_003020_150--Hb_002232_060 Hb_002016_080 Hb_002016_080 Hb_003020_150--Hb_002016_080 Hb_003020_150--Hb_003880_030 Hb_002260_010 Hb_002260_010 Hb_003020_150--Hb_002260_010 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_000085_350 Hb_000085_350 Hb_000163_050--Hb_000085_350 Hb_000538_120 Hb_000538_120 Hb_000163_050--Hb_000538_120 Hb_000163_050--Hb_000739_140 Hb_000413_280 Hb_000413_280 Hb_000163_050--Hb_000413_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.80202 12.6932 36.5765 54.9637 8.93773 12.6173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.8477 143.366 73.129 58.0713 38.4148

CAGE analysis