Hb_005054_280

Information

Type transcription factor
Description TF Family: HB
Location Contig5054: 208443-209097
Sequence    

Annotation

kegg
ID rcu:RCOM_0592100
description Protein WUSCHEL, putative
nr
ID XP_002526863.1
description Protein WUSCHEL, putative [Ricinus communis]
swissprot
ID Q8H1D2
description WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana GN=WOX5 PE=2 SV=1
trembl
ID B9SLJ4
description Protein WUSCHEL, putative OS=Ricinus communis GN=RCOM_0592100 PE=4 SV=1
Gene Ontology
ID GO:0005634
description wuschel-related homeobox 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_280 0.0 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
2 Hb_007420_020 0.066118682 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_114310_050 0.0692020458 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
4 Hb_000614_190 0.071830446 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
5 Hb_003562_040 0.0835847114 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
6 Hb_005034_010 0.0866112478 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_008111_010 0.0907407863 - - hypothetical protein VITISV_021527 [Vitis vinifera]
8 Hb_026144_030 0.0993360162 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
9 Hb_001174_030 0.1021801213 - - unnamed protein product [Vitis vinifera]
10 Hb_007420_010 0.1062258456 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
11 Hb_004306_140 0.1075883522 - - calcineurin-like phosphoesterase [Manihot esculenta]
12 Hb_001515_030 0.1096938149 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_000028_460 0.1122012461 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
14 Hb_174101_010 0.1140108351 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
15 Hb_000563_120 0.1152784794 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
16 Hb_006269_010 0.1175733506 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
17 Hb_002000_130 0.1186398375 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
18 Hb_001143_140 0.1204201987 - - Aldehyde dehydrogenase, putative [Ricinus communis]
19 Hb_167272_010 0.1206385707 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
20 Hb_014361_020 0.1224705834 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]

Gene co-expression network

sample Hb_005054_280 Hb_005054_280 Hb_007420_020 Hb_007420_020 Hb_005054_280--Hb_007420_020 Hb_114310_050 Hb_114310_050 Hb_005054_280--Hb_114310_050 Hb_000614_190 Hb_000614_190 Hb_005054_280--Hb_000614_190 Hb_003562_040 Hb_003562_040 Hb_005054_280--Hb_003562_040 Hb_005034_010 Hb_005034_010 Hb_005054_280--Hb_005034_010 Hb_008111_010 Hb_008111_010 Hb_005054_280--Hb_008111_010 Hb_007420_020--Hb_114310_050 Hb_007420_020--Hb_000614_190 Hb_007420_010 Hb_007420_010 Hb_007420_020--Hb_007420_010 Hb_123560_050 Hb_123560_050 Hb_007420_020--Hb_123560_050 Hb_026144_030 Hb_026144_030 Hb_007420_020--Hb_026144_030 Hb_114310_050--Hb_000614_190 Hb_114310_050--Hb_007420_010 Hb_004306_140 Hb_004306_140 Hb_114310_050--Hb_004306_140 Hb_001515_030 Hb_001515_030 Hb_114310_050--Hb_001515_030 Hb_000614_190--Hb_026144_030 Hb_000614_190--Hb_005034_010 Hb_001174_030 Hb_001174_030 Hb_000614_190--Hb_001174_030 Hb_003562_040--Hb_005034_010 Hb_003562_040--Hb_001174_030 Hb_005074_010 Hb_005074_010 Hb_003562_040--Hb_005074_010 Hb_175670_010 Hb_175670_010 Hb_003562_040--Hb_175670_010 Hb_007007_090 Hb_007007_090 Hb_003562_040--Hb_007007_090 Hb_005034_010--Hb_001174_030 Hb_174101_010 Hb_174101_010 Hb_005034_010--Hb_174101_010 Hb_003835_030 Hb_003835_030 Hb_005034_010--Hb_003835_030 Hb_008111_010--Hb_026144_030 Hb_085010_010 Hb_085010_010 Hb_008111_010--Hb_085010_010 Hb_005306_020 Hb_005306_020 Hb_008111_010--Hb_005306_020 Hb_001971_020 Hb_001971_020 Hb_008111_010--Hb_001971_020 Hb_001143_140 Hb_001143_140 Hb_008111_010--Hb_001143_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.835762 0.233973 0.459997 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.437904 0.507842

CAGE analysis