Hb_005054_290

Information

Type -
Description -
Location Contig5054: 212167-216087
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19940g
description POPTRDRAFT_659552; Eukaryotic translation initiation factor 3 subunit 5 family protein
nr
ID XP_012087805.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
swissprot
ID O04202
description Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=1 SV=1
trembl
ID A0A067L8U8
description Eukaryotic translation initiation factor 3 subunit F OS=Jatropha curcas GN=JCGZ_01317 PE=3 SV=1
Gene Ontology
ID GO:0005634
description eukaryotic translation initiation factor 3 subunit f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46084: 212077-216107 , PASA_asmbl_46085: 213078-213266
cDNA
(Sanger)
(ID:Location)		 027_H18.ab1: 214092-216093 , 036_G20.ab1: 212740-216093 , 036_I11.ab1: 212974-216093 , 049_H08.ab1: 212934-216093 , 051_B05.ab1: 212767-216056

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_290 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
2 Hb_000000_460 0.0556537738 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
3 Hb_000329_630 0.0731313098 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
4 Hb_001439_100 0.0731788058 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
5 Hb_001102_140 0.074322768 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
6 Hb_000003_480 0.0841798089 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
7 Hb_000023_280 0.084682005 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
8 Hb_003761_010 0.0857816871 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_093084_050 0.0873525196 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
10 Hb_000445_420 0.0927585306 - - protein transporter, putative [Ricinus communis]
11 Hb_010142_030 0.0948105659 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_000015_040 0.0964947093 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
13 Hb_000656_110 0.0972613189 - - nucleolysin tia-1, putative [Ricinus communis]
14 Hb_002685_110 0.0977438629 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
15 Hb_003693_070 0.0986166741 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
16 Hb_017224_030 0.0989311485 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
17 Hb_106724_020 0.0991414932 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
18 Hb_003057_100 0.0992442811 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
19 Hb_003918_010 0.0995823111 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
20 Hb_010417_080 0.1000335589 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005054_290 Hb_005054_290 Hb_000000_460 Hb_000000_460 Hb_005054_290--Hb_000000_460 Hb_000329_630 Hb_000329_630 Hb_005054_290--Hb_000329_630 Hb_001439_100 Hb_001439_100 Hb_005054_290--Hb_001439_100 Hb_001102_140 Hb_001102_140 Hb_005054_290--Hb_001102_140 Hb_000003_480 Hb_000003_480 Hb_005054_290--Hb_000003_480 Hb_000023_280 Hb_000023_280 Hb_005054_290--Hb_000023_280 Hb_000000_460--Hb_001102_140 Hb_000000_460--Hb_001439_100 Hb_000705_210 Hb_000705_210 Hb_000000_460--Hb_000705_210 Hb_000679_010 Hb_000679_010 Hb_000000_460--Hb_000679_010 Hb_000000_460--Hb_000329_630 Hb_000329_630--Hb_001439_100 Hb_000571_120 Hb_000571_120 Hb_000329_630--Hb_000571_120 Hb_000445_420 Hb_000445_420 Hb_000329_630--Hb_000445_420 Hb_000329_650 Hb_000329_650 Hb_000329_630--Hb_000329_650 Hb_029584_050 Hb_029584_050 Hb_001439_100--Hb_029584_050 Hb_000015_040 Hb_000015_040 Hb_001439_100--Hb_000015_040 Hb_000230_270 Hb_000230_270 Hb_001439_100--Hb_000230_270 Hb_093084_050 Hb_093084_050 Hb_001102_140--Hb_093084_050 Hb_106724_020 Hb_106724_020 Hb_001102_140--Hb_106724_020 Hb_000656_110 Hb_000656_110 Hb_001102_140--Hb_000656_110 Hb_002685_110 Hb_002685_110 Hb_001102_140--Hb_002685_110 Hb_000031_220 Hb_000031_220 Hb_000003_480--Hb_000031_220 Hb_000260_220 Hb_000260_220 Hb_000003_480--Hb_000260_220 Hb_003847_080 Hb_003847_080 Hb_000003_480--Hb_003847_080 Hb_002982_040 Hb_002982_040 Hb_000003_480--Hb_002982_040 Hb_000003_480--Hb_106724_020 Hb_010142_030 Hb_010142_030 Hb_000023_280--Hb_010142_030 Hb_003761_010 Hb_003761_010 Hb_000023_280--Hb_003761_010 Hb_004143_040 Hb_004143_040 Hb_000023_280--Hb_004143_040 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_001215_040 Hb_001215_040 Hb_000023_280--Hb_001215_040 Hb_000116_410 Hb_000116_410 Hb_000023_280--Hb_000116_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.0976 58.9721 26.0364 63.4372 55.1389 74.5048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.798 71.8186 72.2866 70.6312 21.6042

CAGE analysis