Hb_005054_300

Information

Type -
Description -
Location Contig5054: 220289-221919
Sequence    

Annotation

kegg
ID rcu:RCOM_0592140
description Aquaporin PIP1.3, putative
nr
ID ADN94473.1
description aquaporin [Hevea brasiliensis]
swissprot
ID Q7XSQ9
description Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3
trembl
ID E2D888
description Aquaporin OS=Hevea brasiliensis GN=PIP1;1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description probable aquaporin pip-type 7a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46086: 220203-222000 , PASA_asmbl_46087: 221091-221986
cDNA
(Sanger)
(ID:Location)		 017_H17.ab1: 221362-222000 , 029_M09.ab1: 221401-222000 , 052_N17.ab1: 221053-222004

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_300 0.0 - - aquaporin [Hevea brasiliensis]
2 Hb_111985_060 0.0731662565 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
3 Hb_011054_030 0.0885504188 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
4 Hb_003090_060 0.0922022784 - - PAR1 protein [Theobroma cacao]
5 Hb_009778_030 0.1013267715 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
6 Hb_000123_310 0.102461101 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
7 Hb_002219_090 0.1073896044 - - protein kinase atmrk1, putative [Ricinus communis]
8 Hb_001363_030 0.109601044 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
9 Hb_001376_020 0.1110722199 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
10 Hb_021596_070 0.1141637355 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
11 Hb_000003_620 0.1147944859 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
12 Hb_149056_010 0.1155212594 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
13 Hb_079955_010 0.1186640452 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
14 Hb_118777_010 0.1207385904 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_000146_110 0.121162807 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
16 Hb_007371_020 0.1219311453 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
17 Hb_000333_130 0.1226244015 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_000345_190 0.1252465865 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
19 Hb_003636_010 0.1253594535 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
20 Hb_000111_130 0.1259794403 - - PREDICTED: receptor-like protein 12 [Populus euphratica]

Gene co-expression network

sample Hb_005054_300 Hb_005054_300 Hb_111985_060 Hb_111985_060 Hb_005054_300--Hb_111985_060 Hb_011054_030 Hb_011054_030 Hb_005054_300--Hb_011054_030 Hb_003090_060 Hb_003090_060 Hb_005054_300--Hb_003090_060 Hb_009778_030 Hb_009778_030 Hb_005054_300--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_005054_300--Hb_000123_310 Hb_002219_090 Hb_002219_090 Hb_005054_300--Hb_002219_090 Hb_111985_060--Hb_003090_060 Hb_111985_060--Hb_011054_030 Hb_021596_070 Hb_021596_070 Hb_111985_060--Hb_021596_070 Hb_002621_030 Hb_002621_030 Hb_111985_060--Hb_002621_030 Hb_008667_020 Hb_008667_020 Hb_111985_060--Hb_008667_020 Hb_000039_100 Hb_000039_100 Hb_011054_030--Hb_000039_100 Hb_011054_030--Hb_021596_070 Hb_011054_030--Hb_008667_020 Hb_029866_140 Hb_029866_140 Hb_011054_030--Hb_029866_140 Hb_003090_060--Hb_002621_030 Hb_079955_010 Hb_079955_010 Hb_003090_060--Hb_079955_010 Hb_151281_010 Hb_151281_010 Hb_003090_060--Hb_151281_010 Hb_004931_050 Hb_004931_050 Hb_003090_060--Hb_004931_050 Hb_000146_110 Hb_000146_110 Hb_009778_030--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_009778_030--Hb_000003_620 Hb_002890_060 Hb_002890_060 Hb_009778_030--Hb_002890_060 Hb_000111_130 Hb_000111_130 Hb_009778_030--Hb_000111_130 Hb_009778_030--Hb_000123_310 Hb_001363_030 Hb_001363_030 Hb_009778_030--Hb_001363_030 Hb_000123_310--Hb_002890_060 Hb_000123_310--Hb_000146_110 Hb_041290_030 Hb_041290_030 Hb_000123_310--Hb_041290_030 Hb_000123_310--Hb_021596_070 Hb_149056_010 Hb_149056_010 Hb_002219_090--Hb_149056_010 Hb_001073_060 Hb_001073_060 Hb_002219_090--Hb_001073_060 Hb_011791_010 Hb_011791_010 Hb_002219_090--Hb_011791_010 Hb_017417_030 Hb_017417_030 Hb_002219_090--Hb_017417_030 Hb_000676_030 Hb_000676_030 Hb_002219_090--Hb_000676_030 Hb_001009_110 Hb_001009_110 Hb_002219_090--Hb_001009_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38487 3902.9 277.622 311.974 1.81489 2.2506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45933 0.617218 1.31156 1018.43 138.389

CAGE analysis