Hb_005054_350

Information

Type -
Description -
Location Contig5054: 263128-265892
Sequence    

Annotation

kegg
ID vvi:100250067
description 60S acidic ribosomal protein P0
nr
ID XP_002268645.1
description PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
swissprot
ID O04204
description 60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=1 SV=1
trembl
ID F6HC03
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g00270 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s acidic ribosomal protein p0

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46092: 263389-263708 , PASA_asmbl_46093: 263779-265914 , PASA_asmbl_46094: 264247-264468
cDNA
(Sanger)
(ID:Location)		 031_M22.ab1: 263779-265877

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_350 0.0 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
2 Hb_000120_470 0.0689910629 - - hypothetical protein VITISV_017372 [Vitis vinifera]
3 Hb_000768_090 0.0700155045 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
4 Hb_003435_020 0.0720802385 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_001758_100 0.0729908708 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
6 Hb_000032_380 0.073627471 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002078_140 0.0784546702 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
8 Hb_011344_210 0.0812126567 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
9 Hb_000667_070 0.0817962825 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
10 Hb_005489_060 0.0820289872 - - Anamorsin, putative [Ricinus communis]
11 Hb_000792_130 0.0841447407 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
12 Hb_000317_240 0.0846443226 - - PREDICTED: protein DYAD [Jatropha curcas]
13 Hb_008900_010 0.0851717933 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
14 Hb_024071_020 0.0859487529 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
15 Hb_000610_050 0.0860262979 - - skp1, putative [Ricinus communis]
16 Hb_005725_270 0.0867572828 - - PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
17 Hb_000684_380 0.0869389117 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
18 Hb_005365_030 0.0873363302 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
19 Hb_000465_460 0.0874143223 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
20 Hb_000227_080 0.0874740693 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005054_350 Hb_005054_350 Hb_000120_470 Hb_000120_470 Hb_005054_350--Hb_000120_470 Hb_000768_090 Hb_000768_090 Hb_005054_350--Hb_000768_090 Hb_003435_020 Hb_003435_020 Hb_005054_350--Hb_003435_020 Hb_001758_100 Hb_001758_100 Hb_005054_350--Hb_001758_100 Hb_000032_380 Hb_000032_380 Hb_005054_350--Hb_000032_380 Hb_002078_140 Hb_002078_140 Hb_005054_350--Hb_002078_140 Hb_000120_470--Hb_001758_100 Hb_008900_010 Hb_008900_010 Hb_000120_470--Hb_008900_010 Hb_007416_320 Hb_007416_320 Hb_000120_470--Hb_007416_320 Hb_058999_020 Hb_058999_020 Hb_000120_470--Hb_058999_020 Hb_000058_060 Hb_000058_060 Hb_000120_470--Hb_000058_060 Hb_000317_240 Hb_000317_240 Hb_000768_090--Hb_000317_240 Hb_000039_220 Hb_000039_220 Hb_000768_090--Hb_000039_220 Hb_000684_380 Hb_000684_380 Hb_000768_090--Hb_000684_380 Hb_000468_060 Hb_000468_060 Hb_000768_090--Hb_000468_060 Hb_000215_110 Hb_000215_110 Hb_000768_090--Hb_000215_110 Hb_000172_320 Hb_000172_320 Hb_003435_020--Hb_000172_320 Hb_006693_020 Hb_006693_020 Hb_003435_020--Hb_006693_020 Hb_003435_020--Hb_002078_140 Hb_000059_370 Hb_000059_370 Hb_003435_020--Hb_000059_370 Hb_000431_170 Hb_000431_170 Hb_003435_020--Hb_000431_170 Hb_000504_140 Hb_000504_140 Hb_001758_100--Hb_000504_140 Hb_001758_100--Hb_008900_010 Hb_000465_460 Hb_000465_460 Hb_001758_100--Hb_000465_460 Hb_001758_100--Hb_000317_240 Hb_000757_060 Hb_000757_060 Hb_001758_100--Hb_000757_060 Hb_007101_300 Hb_007101_300 Hb_000032_380--Hb_007101_300 Hb_003389_040 Hb_003389_040 Hb_000032_380--Hb_003389_040 Hb_001278_100 Hb_001278_100 Hb_000032_380--Hb_001278_100 Hb_000417_040 Hb_000417_040 Hb_000032_380--Hb_000417_040 Hb_008226_060 Hb_008226_060 Hb_000032_380--Hb_008226_060 Hb_124953_020 Hb_124953_020 Hb_002078_140--Hb_124953_020 Hb_001691_140 Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_001016_150 Hb_001016_150 Hb_002078_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_002078_140--Hb_001863_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
156.355 159.525 216.517 208.962 195.546 289.359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
257.605 423.1 247.213 234.34 87.1856

CAGE analysis