Hb_005056_040

Information

Type -
Description -
Location Contig5056: 14882-15376
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14730g
description POPTRDRAFT_563337; hypothetical protein
nr
ID XP_002310885.1
description hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HFY7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14730g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46097: 14746-15296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005056_040 0.0 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
2 Hb_001477_050 0.0424220845 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_002750_030 0.0605355852 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
4 Hb_000037_150 0.0679494798 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
5 Hb_000836_640 0.0687256094 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
6 Hb_024074_030 0.0709291906 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
7 Hb_001500_090 0.0729948739 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000162_010 0.0745452136 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
9 Hb_011912_010 0.074622033 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_000413_030 0.0769023605 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
11 Hb_064047_020 0.0813143716 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
12 Hb_000173_140 0.0850714822 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
13 Hb_002660_180 0.0868551841 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001307_180 0.0878323363 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
15 Hb_002276_120 0.0888852248 - - hypothetical protein POPTR_0010s14710g [Populus trichocarpa]
16 Hb_000696_130 0.0911879127 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000805_050 0.0940726974 - - zinc transporter, putative [Ricinus communis]
18 Hb_000776_090 0.0960714207 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
19 Hb_000964_080 0.0961910936 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
20 Hb_006634_120 0.1010929042 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005056_040 Hb_005056_040 Hb_001477_050 Hb_001477_050 Hb_005056_040--Hb_001477_050 Hb_002750_030 Hb_002750_030 Hb_005056_040--Hb_002750_030 Hb_000037_150 Hb_000037_150 Hb_005056_040--Hb_000037_150 Hb_000836_640 Hb_000836_640 Hb_005056_040--Hb_000836_640 Hb_024074_030 Hb_024074_030 Hb_005056_040--Hb_024074_030 Hb_001500_090 Hb_001500_090 Hb_005056_040--Hb_001500_090 Hb_001477_050--Hb_000836_640 Hb_001477_050--Hb_024074_030 Hb_001477_050--Hb_000037_150 Hb_001477_050--Hb_002750_030 Hb_000162_010 Hb_000162_010 Hb_001477_050--Hb_000162_010 Hb_002750_030--Hb_000836_640 Hb_002750_030--Hb_000162_010 Hb_002750_030--Hb_001500_090 Hb_064047_020 Hb_064047_020 Hb_002750_030--Hb_064047_020 Hb_011912_010 Hb_011912_010 Hb_000037_150--Hb_011912_010 Hb_002660_180 Hb_002660_180 Hb_000037_150--Hb_002660_180 Hb_000037_150--Hb_024074_030 Hb_004846_110 Hb_004846_110 Hb_000037_150--Hb_004846_110 Hb_000696_130 Hb_000696_130 Hb_000037_150--Hb_000696_130 Hb_000776_090 Hb_000776_090 Hb_000836_640--Hb_000776_090 Hb_000836_640--Hb_000162_010 Hb_001307_180 Hb_001307_180 Hb_000836_640--Hb_001307_180 Hb_005523_030 Hb_005523_030 Hb_000836_640--Hb_005523_030 Hb_024074_030--Hb_002660_180 Hb_024074_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_024074_030--Hb_002636_170 Hb_024074_030--Hb_001307_180 Hb_000193_320 Hb_000193_320 Hb_001500_090--Hb_000193_320 Hb_001500_090--Hb_000776_090 Hb_001500_090--Hb_000836_640 Hb_009476_080 Hb_009476_080 Hb_001500_090--Hb_009476_080 Hb_001500_090--Hb_001477_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0582541 0.973271 1.79552 76.9792 0.113557 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.51661 39.1902

CAGE analysis