Hb_005056_060

Information

Type -
Description -
Location Contig5056: 26202-28703
Sequence    

Annotation

kegg
ID rcu:RCOM_0366250
description hypothetical protein
nr
ID XP_012079444.1
description PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
swissprot
ID Q9ZUU2
description Thioredoxin-like protein AAED1, chloroplastic OS=Arabidopsis thaliana GN=At2g37240 PE=2 SV=2
trembl
ID A0A067KIM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12571 PE=4 SV=1
Gene Ontology
ID GO:0009570
description thioredoxin-like protein chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46100: 26240-28732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005056_060 0.0 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
2 Hb_004108_080 0.0616629128 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
3 Hb_000567_030 0.064240443 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
4 Hb_000395_080 0.1004658661 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
5 Hb_004310_030 0.101729749 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
6 Hb_005329_020 0.1021149248 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
7 Hb_007254_040 0.1024784366 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
8 Hb_009158_030 0.104338319 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
9 Hb_000696_340 0.1050735753 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
10 Hb_029879_110 0.1075161777 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
11 Hb_004970_110 0.1087713959 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
12 Hb_008554_020 0.1122600679 - - -
13 Hb_011310_190 0.1151811141 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
14 Hb_000329_650 0.115250168 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
15 Hb_002333_080 0.1159848395 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
16 Hb_000086_380 0.1164283739 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
17 Hb_000638_080 0.1168435781 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
18 Hb_000116_440 0.1196269671 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
19 Hb_000877_060 0.1200491242 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
20 Hb_007317_180 0.1213861965 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]

Gene co-expression network

sample Hb_005056_060 Hb_005056_060 Hb_004108_080 Hb_004108_080 Hb_005056_060--Hb_004108_080 Hb_000567_030 Hb_000567_030 Hb_005056_060--Hb_000567_030 Hb_000395_080 Hb_000395_080 Hb_005056_060--Hb_000395_080 Hb_004310_030 Hb_004310_030 Hb_005056_060--Hb_004310_030 Hb_005329_020 Hb_005329_020 Hb_005056_060--Hb_005329_020 Hb_007254_040 Hb_007254_040 Hb_005056_060--Hb_007254_040 Hb_004108_080--Hb_000567_030 Hb_008554_020 Hb_008554_020 Hb_004108_080--Hb_008554_020 Hb_004108_080--Hb_004310_030 Hb_000446_030 Hb_000446_030 Hb_004108_080--Hb_000446_030 Hb_004108_080--Hb_005329_020 Hb_005389_150 Hb_005389_150 Hb_000567_030--Hb_005389_150 Hb_000086_380 Hb_000086_380 Hb_000567_030--Hb_000086_380 Hb_000003_080 Hb_000003_080 Hb_000567_030--Hb_000003_080 Hb_003266_050 Hb_003266_050 Hb_000567_030--Hb_003266_050 Hb_011828_020 Hb_011828_020 Hb_000395_080--Hb_011828_020 Hb_000877_060 Hb_000877_060 Hb_000395_080--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_000395_080--Hb_001477_130 Hb_000696_340 Hb_000696_340 Hb_000395_080--Hb_000696_340 Hb_002137_020 Hb_002137_020 Hb_000395_080--Hb_002137_020 Hb_005215_030 Hb_005215_030 Hb_000395_080--Hb_005215_030 Hb_004310_030--Hb_007254_040 Hb_004310_030--Hb_008554_020 Hb_007894_140 Hb_007894_140 Hb_004310_030--Hb_007894_140 Hb_000638_080 Hb_000638_080 Hb_004310_030--Hb_000638_080 Hb_001135_050 Hb_001135_050 Hb_004310_030--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_004310_030--Hb_005539_030 Hb_005329_020--Hb_000696_340 Hb_000329_630 Hb_000329_630 Hb_005329_020--Hb_000329_630 Hb_000571_120 Hb_000571_120 Hb_005329_020--Hb_000571_120 Hb_005329_020--Hb_000395_080 Hb_005329_020--Hb_000877_060 Hb_007254_040--Hb_008554_020 Hb_007317_180 Hb_007317_180 Hb_007254_040--Hb_007317_180 Hb_000169_010 Hb_000169_010 Hb_007254_040--Hb_000169_010 Hb_011310_190 Hb_011310_190 Hb_007254_040--Hb_011310_190 Hb_004970_110 Hb_004970_110 Hb_007254_040--Hb_004970_110 Hb_007254_040--Hb_001135_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.7173 23.1762 11.4928 14.7205 23.7487 50.0481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.4372 46.1119 21.0135 32.8532 16.3809

CAGE analysis