Hb_005056_100

Information

Type transcription factor
Description TF Family: AP2
Location Contig5056: 75760-79118
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01260g
description POPTRDRAFT_572000; hypothetical protein
nr
ID XP_012079449.1
description PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
swissprot
ID Q38914
description AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2
trembl
ID A0A067KAR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12574 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor ant

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005056_100 0.0 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
2 Hb_101370_010 0.1369254838 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_001405_060 0.1555593034 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
4 Hb_002233_080 0.1564206892 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
5 Hb_000567_220 0.1607219888 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
6 Hb_012395_260 0.1607694008 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
7 Hb_004297_080 0.1630433663 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_076771_010 0.165792472 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_000666_120 0.1672242556 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_003864_020 0.1686072932 - - kinase, putative [Ricinus communis]
11 Hb_005282_010 0.1744087147 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
12 Hb_000236_120 0.1776256671 - - -
13 Hb_004586_230 0.1776464781 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008948_110 0.1840444068 - - PREDICTED: peroxidase 25 [Jatropha curcas]
15 Hb_032050_070 0.1896404954 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
16 Hb_003449_030 0.1921021356 - - PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Camelina sativa]
17 Hb_010142_040 0.1921661047 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
18 Hb_001897_030 0.1926774841 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
19 Hb_012272_010 0.1938051864 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_027905_010 0.1952479323 - - transferase, transferring glycosyl groups, putative [Ricinus communis]

Gene co-expression network

sample Hb_005056_100 Hb_005056_100 Hb_101370_010 Hb_101370_010 Hb_005056_100--Hb_101370_010 Hb_001405_060 Hb_001405_060 Hb_005056_100--Hb_001405_060 Hb_002233_080 Hb_002233_080 Hb_005056_100--Hb_002233_080 Hb_000567_220 Hb_000567_220 Hb_005056_100--Hb_000567_220 Hb_012395_260 Hb_012395_260 Hb_005056_100--Hb_012395_260 Hb_004297_080 Hb_004297_080 Hb_005056_100--Hb_004297_080 Hb_000732_240 Hb_000732_240 Hb_101370_010--Hb_000732_240 Hb_007951_090 Hb_007951_090 Hb_101370_010--Hb_007951_090 Hb_000172_230 Hb_000172_230 Hb_101370_010--Hb_000172_230 Hb_048944_020 Hb_048944_020 Hb_101370_010--Hb_048944_020 Hb_158349_010 Hb_158349_010 Hb_101370_010--Hb_158349_010 Hb_005282_010 Hb_005282_010 Hb_001405_060--Hb_005282_010 Hb_002234_200 Hb_002234_200 Hb_001405_060--Hb_002234_200 Hb_098160_010 Hb_098160_010 Hb_001405_060--Hb_098160_010 Hb_002849_110 Hb_002849_110 Hb_001405_060--Hb_002849_110 Hb_000373_250 Hb_000373_250 Hb_001405_060--Hb_000373_250 Hb_003633_150 Hb_003633_150 Hb_001405_060--Hb_003633_150 Hb_001019_020 Hb_001019_020 Hb_002233_080--Hb_001019_020 Hb_076771_010 Hb_076771_010 Hb_002233_080--Hb_076771_010 Hb_001675_310 Hb_001675_310 Hb_002233_080--Hb_001675_310 Hb_012272_010 Hb_012272_010 Hb_002233_080--Hb_012272_010 Hb_002233_080--Hb_004297_080 Hb_094437_050 Hb_094437_050 Hb_002233_080--Hb_094437_050 Hb_000604_050 Hb_000604_050 Hb_000567_220--Hb_000604_050 Hb_000270_530 Hb_000270_530 Hb_000567_220--Hb_000270_530 Hb_103149_010 Hb_103149_010 Hb_000567_220--Hb_103149_010 Hb_000567_220--Hb_012395_260 Hb_009476_160 Hb_009476_160 Hb_000567_220--Hb_009476_160 Hb_004586_230 Hb_004586_230 Hb_000567_220--Hb_004586_230 Hb_012395_260--Hb_004586_230 Hb_004659_110 Hb_004659_110 Hb_012395_260--Hb_004659_110 Hb_000201_070 Hb_000201_070 Hb_012395_260--Hb_000201_070 Hb_012395_260--Hb_000604_050 Hb_002025_120 Hb_002025_120 Hb_012395_260--Hb_002025_120 Hb_000702_040 Hb_000702_040 Hb_012395_260--Hb_000702_040 Hb_001472_140 Hb_001472_140 Hb_004297_080--Hb_001472_140 Hb_008406_030 Hb_008406_030 Hb_004297_080--Hb_008406_030 Hb_000666_120 Hb_000666_120 Hb_004297_080--Hb_000666_120 Hb_000210_160 Hb_000210_160 Hb_004297_080--Hb_000210_160 Hb_004297_080--Hb_001675_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.294183 2.37562 0.884719 2.01761 0.105441 0.0364609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.204762 0.187538

CAGE analysis