Hb_005056_120

Information

Type -
Description -
Location Contig5056: 123517-124323
Sequence    

Annotation

kegg
ID rcu:RCOM_0860020
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002530612.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9SX93
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0860020 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable inactive receptor kinase at1g27190

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46103: 123276-123498 , PASA_asmbl_46104: 123510-124615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005056_120 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002768_040 0.0841254474 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006026_020 0.1050368138 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
4 Hb_002627_010 0.121352192 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
5 Hb_009225_070 0.1232855111 - - tonoplast intrinsic protein, putative [Ricinus communis]
6 Hb_001117_180 0.12355369 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
7 Hb_000149_020 0.1275934227 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
8 Hb_001322_010 0.1277510085 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
9 Hb_000028_550 0.1277692048 - - unknown [Medicago truncatula]
10 Hb_120040_010 0.1292370534 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_002592_070 0.1297471074 - - hypothetical protein VITISV_020993 [Vitis vinifera]
12 Hb_000860_030 0.1303670055 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027405_010 0.1305727261 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
14 Hb_000000_300 0.1346930748 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
15 Hb_005000_280 0.1350466467 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
16 Hb_004970_100 0.1352396864 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
17 Hb_004031_050 0.1363480354 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
18 Hb_000740_080 0.137521963 - - -
19 Hb_000897_010 0.1383145753 - - hypothetical protein JCGZ_13196 [Jatropha curcas]
20 Hb_154038_040 0.143382999 - - nutrient reservoir, putative [Ricinus communis]

Gene co-expression network

sample Hb_005056_120 Hb_005056_120 Hb_002768_040 Hb_002768_040 Hb_005056_120--Hb_002768_040 Hb_006026_020 Hb_006026_020 Hb_005056_120--Hb_006026_020 Hb_002627_010 Hb_002627_010 Hb_005056_120--Hb_002627_010 Hb_009225_070 Hb_009225_070 Hb_005056_120--Hb_009225_070 Hb_001117_180 Hb_001117_180 Hb_005056_120--Hb_001117_180 Hb_000149_020 Hb_000149_020 Hb_005056_120--Hb_000149_020 Hb_027405_010 Hb_027405_010 Hb_002768_040--Hb_027405_010 Hb_003607_080 Hb_003607_080 Hb_002768_040--Hb_003607_080 Hb_000897_010 Hb_000897_010 Hb_002768_040--Hb_000897_010 Hb_000740_080 Hb_000740_080 Hb_002768_040--Hb_000740_080 Hb_000352_360 Hb_000352_360 Hb_002768_040--Hb_000352_360 Hb_011355_020 Hb_011355_020 Hb_006026_020--Hb_011355_020 Hb_004970_100 Hb_004970_100 Hb_006026_020--Hb_004970_100 Hb_004031_050 Hb_004031_050 Hb_006026_020--Hb_004031_050 Hb_000373_260 Hb_000373_260 Hb_006026_020--Hb_000373_260 Hb_002897_030 Hb_002897_030 Hb_006026_020--Hb_002897_030 Hb_006026_020--Hb_000149_020 Hb_034688_030 Hb_034688_030 Hb_002627_010--Hb_034688_030 Hb_002592_070 Hb_002592_070 Hb_002627_010--Hb_002592_070 Hb_002627_010--Hb_027405_010 Hb_022693_090 Hb_022693_090 Hb_002627_010--Hb_022693_090 Hb_061054_010 Hb_061054_010 Hb_002627_010--Hb_061054_010 Hb_001775_060 Hb_001775_060 Hb_002627_010--Hb_001775_060 Hb_000468_050 Hb_000468_050 Hb_009225_070--Hb_000468_050 Hb_009225_070--Hb_002592_070 Hb_000816_150 Hb_000816_150 Hb_009225_070--Hb_000816_150 Hb_011314_010 Hb_011314_010 Hb_009225_070--Hb_011314_010 Hb_012553_030 Hb_012553_030 Hb_009225_070--Hb_012553_030 Hb_009225_070--Hb_022693_090 Hb_154038_040 Hb_154038_040 Hb_001117_180--Hb_154038_040 Hb_002811_110 Hb_002811_110 Hb_001117_180--Hb_002811_110 Hb_001117_180--Hb_027405_010 Hb_000162_070 Hb_000162_070 Hb_001117_180--Hb_000162_070 Hb_001117_180--Hb_002592_070 Hb_002522_040 Hb_002522_040 Hb_001117_180--Hb_002522_040 Hb_120040_010 Hb_120040_010 Hb_000149_020--Hb_120040_010 Hb_000149_020--Hb_000740_080 Hb_000149_020--Hb_011355_020 Hb_000149_020--Hb_000897_010 Hb_000149_020--Hb_002897_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0728629 4.41854 2.88909 18.6911 0.196171 0.261108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0667118 0 0.0949627 2.82303 2.1078

CAGE analysis