Hb_005057_010

Information

Type -
Description -
Location Contig5057: 62-873
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005057_010 0.0 - - -
2 Hb_027556_010 0.1114148611 - - -
3 Hb_000140_150 0.1135844215 - - -
4 Hb_010368_070 0.1234633079 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011716_040 0.1498149072 - - -
6 Hb_095397_010 0.154824444 - - hypothetical protein 25 [Hevea brasiliensis]
7 Hb_000525_040 0.1595548336 - - -
8 Hb_000300_530 0.1627633668 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
9 Hb_003304_080 0.1668972498 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
10 Hb_130177_010 0.1675739068 - - hypothetical protein RCOM_0897890 [Ricinus communis]
11 Hb_010931_110 0.1702364912 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000926_270 0.1703435884 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
13 Hb_004092_010 0.1704463887 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_003906_120 0.172959211 - - -
15 Hb_001158_030 0.174224825 - - -
16 Hb_008453_020 0.1756276285 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
17 Hb_000050_120 0.1758766808 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
18 Hb_001628_110 0.1779876458 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
19 Hb_011609_190 0.1780197603 - - 14-3-3 protein 2 [Hevea brasiliensis]
20 Hb_080083_010 0.1812979544 - - -

Gene co-expression network

sample Hb_005057_010 Hb_005057_010 Hb_027556_010 Hb_027556_010 Hb_005057_010--Hb_027556_010 Hb_000140_150 Hb_000140_150 Hb_005057_010--Hb_000140_150 Hb_010368_070 Hb_010368_070 Hb_005057_010--Hb_010368_070 Hb_011716_040 Hb_011716_040 Hb_005057_010--Hb_011716_040 Hb_095397_010 Hb_095397_010 Hb_005057_010--Hb_095397_010 Hb_000525_040 Hb_000525_040 Hb_005057_010--Hb_000525_040 Hb_001158_030 Hb_001158_030 Hb_027556_010--Hb_001158_030 Hb_027556_010--Hb_011716_040 Hb_027556_010--Hb_000140_150 Hb_000926_270 Hb_000926_270 Hb_027556_010--Hb_000926_270 Hb_000958_010 Hb_000958_010 Hb_027556_010--Hb_000958_010 Hb_000140_150--Hb_011716_040 Hb_030414_050 Hb_030414_050 Hb_000140_150--Hb_030414_050 Hb_000140_150--Hb_010368_070 Hb_000140_150--Hb_000926_270 Hb_010368_070--Hb_000525_040 Hb_002903_120 Hb_002903_120 Hb_010368_070--Hb_002903_120 Hb_004032_460 Hb_004032_460 Hb_010368_070--Hb_004032_460 Hb_001628_110 Hb_001628_110 Hb_010368_070--Hb_001628_110 Hb_002172_030 Hb_002172_030 Hb_010368_070--Hb_002172_030 Hb_000050_120 Hb_000050_120 Hb_010368_070--Hb_000050_120 Hb_011716_040--Hb_001158_030 Hb_000033_050 Hb_000033_050 Hb_011716_040--Hb_000033_050 Hb_006499_010 Hb_006499_010 Hb_011716_040--Hb_006499_010 Hb_001186_060 Hb_001186_060 Hb_011716_040--Hb_001186_060 Hb_000014_100 Hb_000014_100 Hb_011716_040--Hb_000014_100 Hb_007810_040 Hb_007810_040 Hb_095397_010--Hb_007810_040 Hb_003906_120 Hb_003906_120 Hb_095397_010--Hb_003906_120 Hb_003304_080 Hb_003304_080 Hb_095397_010--Hb_003304_080 Hb_002232_180 Hb_002232_180 Hb_095397_010--Hb_002232_180 Hb_095397_010--Hb_000050_120 Hb_043637_010 Hb_043637_010 Hb_095397_010--Hb_043637_010 Hb_000525_040--Hb_002903_120 Hb_000525_040--Hb_004032_460 Hb_019936_010 Hb_019936_010 Hb_000525_040--Hb_019936_010 Hb_007634_020 Hb_007634_020 Hb_000525_040--Hb_007634_020 Hb_011616_030 Hb_011616_030 Hb_000525_040--Hb_011616_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4698 2.46891 0.140285 0 28.1576 7.39219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.19147 5.38716 6.7392 1.00268 0.131006

CAGE analysis