Hb_005057_020

Information

Type -
Description -
Location Contig5057: 11808-13538
Sequence    

Annotation

kegg
ID tcc:TCM_005650
description TRAF-like family protein, putative
nr
ID XP_012069172.1
description PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L123
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24937 PE=4 SV=1
Gene Ontology
ID GO:0005515
description btb poz and math domain-containing protein 2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46106: 12550-13058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005057_020 0.0 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
2 Hb_003216_010 0.0363804013 - - glycosyl hydrolase family protein [Populus trichocarpa]
3 Hb_004342_040 0.0390721148 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
4 Hb_000053_150 0.0525328804 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
5 Hb_000696_120 0.0534655352 - - PREDICTED: protein FD [Populus euphratica]
6 Hb_122079_010 0.0536158181 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
7 Hb_178968_010 0.0540554014 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
8 Hb_061335_010 0.0614713421 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
9 Hb_003540_010 0.0701429888 - - -
10 Hb_010080_040 0.0759382458 - - conserved hypothetical protein [Ricinus communis]
11 Hb_174829_030 0.0761678019 - - conserved hypothetical protein [Ricinus communis]
12 Hb_157881_010 0.0806635191 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_004137_090 0.0875424677 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
14 Hb_001006_080 0.0888255255 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
15 Hb_000917_220 0.0949641921 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
16 Hb_003561_020 0.0952319897 - - gulonolactone oxidase, putative [Ricinus communis]
17 Hb_010812_080 0.098267846 - - PREDICTED: methylesterase 17 [Jatropha curcas]
18 Hb_018671_010 0.1011804306 - - -
19 Hb_002186_120 0.1040630234 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
20 Hb_000224_050 0.109745642 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005057_020 Hb_005057_020 Hb_003216_010 Hb_003216_010 Hb_005057_020--Hb_003216_010 Hb_004342_040 Hb_004342_040 Hb_005057_020--Hb_004342_040 Hb_000053_150 Hb_000053_150 Hb_005057_020--Hb_000053_150 Hb_000696_120 Hb_000696_120 Hb_005057_020--Hb_000696_120 Hb_122079_010 Hb_122079_010 Hb_005057_020--Hb_122079_010 Hb_178968_010 Hb_178968_010 Hb_005057_020--Hb_178968_010 Hb_003540_010 Hb_003540_010 Hb_003216_010--Hb_003540_010 Hb_003216_010--Hb_000696_120 Hb_174829_030 Hb_174829_030 Hb_003216_010--Hb_174829_030 Hb_003216_010--Hb_178968_010 Hb_000917_220 Hb_000917_220 Hb_003216_010--Hb_000917_220 Hb_157881_010 Hb_157881_010 Hb_004342_040--Hb_157881_010 Hb_061335_010 Hb_061335_010 Hb_004342_040--Hb_061335_010 Hb_004342_040--Hb_000696_120 Hb_004342_040--Hb_003216_010 Hb_004342_040--Hb_122079_010 Hb_000053_150--Hb_178968_010 Hb_000053_150--Hb_122079_010 Hb_018671_010 Hb_018671_010 Hb_000053_150--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_000053_150--Hb_002186_120 Hb_010812_080 Hb_010812_080 Hb_000053_150--Hb_010812_080 Hb_000696_120--Hb_174829_030 Hb_001006_080 Hb_001006_080 Hb_000696_120--Hb_001006_080 Hb_010080_040 Hb_010080_040 Hb_000696_120--Hb_010080_040 Hb_122079_010--Hb_010812_080 Hb_122079_010--Hb_061335_010 Hb_122079_010--Hb_178968_010 Hb_000277_040 Hb_000277_040 Hb_122079_010--Hb_000277_040 Hb_178968_010--Hb_003540_010 Hb_178968_010--Hb_018671_010 Hb_178968_010--Hb_002186_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0226282 0.0813109 0.372339 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis