Hb_005057_030

Information

Type -
Description -
Location Contig5057: 46041-48419
Sequence    

Annotation

kegg
ID rcu:RCOM_0884210
description Leucoanthocyanidin dioxygenase, putative (EC:1.14.11.19)
nr
ID XP_002522603.1
description Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
swissprot
ID P51091
description Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1
trembl
ID B9S9D4
description Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis GN=RCOM_0884210 PE=3 SV=1
Gene Ontology
ID GO:0045431
description probable 2-oxoglutarate fe -dependent dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46107: 45943-48315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005057_030 0.0 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
2 Hb_005723_090 0.0604070112 - - conserved hypothetical protein [Ricinus communis]
3 Hb_125961_010 0.0716393286 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000120_480 0.0724834978 - - -
5 Hb_005183_100 0.0766217281 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
6 Hb_002713_060 0.0790134897 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
7 Hb_003226_230 0.0839057823 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
8 Hb_162676_010 0.0892809784 - - ATP binding protein, putative [Ricinus communis]
9 Hb_009522_020 0.0935355233 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
10 Hb_001296_060 0.1012351359 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
11 Hb_008461_070 0.1040774158 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
12 Hb_001369_390 0.1076410902 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
13 Hb_010222_060 0.1088187381 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000271_130 0.1100987144 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
15 Hb_001158_250 0.1122130279 - - conserved hypothetical protein [Ricinus communis]
16 Hb_173387_010 0.112579277 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
17 Hb_002095_020 0.1128089791 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
18 Hb_016277_030 0.1128972859 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
19 Hb_066293_010 0.1140190377 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
20 Hb_000622_030 0.1143357754 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_005057_030 Hb_005057_030 Hb_005723_090 Hb_005723_090 Hb_005057_030--Hb_005723_090 Hb_125961_010 Hb_125961_010 Hb_005057_030--Hb_125961_010 Hb_000120_480 Hb_000120_480 Hb_005057_030--Hb_000120_480 Hb_005183_100 Hb_005183_100 Hb_005057_030--Hb_005183_100 Hb_002713_060 Hb_002713_060 Hb_005057_030--Hb_002713_060 Hb_003226_230 Hb_003226_230 Hb_005057_030--Hb_003226_230 Hb_005723_090--Hb_005183_100 Hb_005723_090--Hb_000120_480 Hb_000622_030 Hb_000622_030 Hb_005723_090--Hb_000622_030 Hb_001158_250 Hb_001158_250 Hb_005723_090--Hb_001158_250 Hb_001305_020 Hb_001305_020 Hb_005723_090--Hb_001305_020 Hb_125961_010--Hb_003226_230 Hb_162676_010 Hb_162676_010 Hb_125961_010--Hb_162676_010 Hb_125961_010--Hb_000120_480 Hb_008461_070 Hb_008461_070 Hb_125961_010--Hb_008461_070 Hb_066293_010 Hb_066293_010 Hb_125961_010--Hb_066293_010 Hb_000120_480--Hb_003226_230 Hb_000120_480--Hb_162676_010 Hb_000120_480--Hb_001158_250 Hb_001206_100 Hb_001206_100 Hb_005183_100--Hb_001206_100 Hb_016277_030 Hb_016277_030 Hb_005183_100--Hb_016277_030 Hb_009522_020 Hb_009522_020 Hb_005183_100--Hb_009522_020 Hb_000000_290 Hb_000000_290 Hb_005183_100--Hb_000000_290 Hb_173387_010 Hb_173387_010 Hb_002713_060--Hb_173387_010 Hb_010222_060 Hb_010222_060 Hb_002713_060--Hb_010222_060 Hb_002636_070 Hb_002636_070 Hb_002713_060--Hb_002636_070 Hb_002713_060--Hb_000120_480 Hb_002713_060--Hb_009522_020 Hb_003226_230--Hb_162676_010 Hb_003226_230--Hb_005723_090 Hb_003226_230--Hb_066293_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.37889 4.29164 10.4587 0 0.0173544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0764168 0.0300564 0 2.06905 16.9654

CAGE analysis