Hb_005062_060

Information

Type -
Description -
Location Contig5062: 52391-57001
Sequence    

Annotation

kegg
ID rcu:RCOM_0290330
description Transcription factor RF2a, putative
nr
ID XP_012071280.1
description PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
swissprot
ID Q8W3M7
description Uncharacterized protein At4g06598 OS=Arabidopsis thaliana GN=At4g06598 PE=2 SV=2
trembl
ID A0A067KV23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04965 PE=4 SV=1
Gene Ontology
ID GO:0044763
description basic-leucine zipper transcription factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46113: 52319-58583 , PASA_asmbl_46114: 54383-54547 , PASA_asmbl_46115: 57177-57603
cDNA
(Sanger)
(ID:Location)		 024_F06.ab1: 56394-58583

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005062_060 0.0 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
2 Hb_022693_130 0.0673585456 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_002053_050 0.0798993598 - - Kinesin heavy chain, putative [Ricinus communis]
4 Hb_160271_010 0.0883905156 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
5 Hb_005656_070 0.0914215533 - - PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000107_250 0.0927318997 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
7 Hb_000453_030 0.0949542244 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
8 Hb_000388_150 0.0992435319 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
9 Hb_010172_010 0.1009311415 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
10 Hb_000645_180 0.1018636487 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
11 Hb_002942_230 0.1022100051 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
12 Hb_000320_190 0.1036089398 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
13 Hb_006006_060 0.1047452197 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
14 Hb_000510_150 0.1050653288 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
15 Hb_001279_020 0.1098772242 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
16 Hb_010620_050 0.1103924005 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
17 Hb_001411_130 0.1111708008 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
18 Hb_001188_100 0.1119738958 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
19 Hb_003687_080 0.1120388691 - - PREDICTED: casein kinase I-like [Jatropha curcas]
20 Hb_002837_040 0.1128541117 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005062_060 Hb_005062_060 Hb_022693_130 Hb_022693_130 Hb_005062_060--Hb_022693_130 Hb_002053_050 Hb_002053_050 Hb_005062_060--Hb_002053_050 Hb_160271_010 Hb_160271_010 Hb_005062_060--Hb_160271_010 Hb_005656_070 Hb_005656_070 Hb_005062_060--Hb_005656_070 Hb_000107_250 Hb_000107_250 Hb_005062_060--Hb_000107_250 Hb_000453_030 Hb_000453_030 Hb_005062_060--Hb_000453_030 Hb_022693_130--Hb_160271_010 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_000108_020 Hb_000108_020 Hb_022693_130--Hb_000108_020 Hb_022693_130--Hb_000107_250 Hb_002053_050--Hb_000107_250 Hb_002053_050--Hb_005656_070 Hb_002053_050--Hb_022693_130 Hb_000815_230 Hb_000815_230 Hb_002053_050--Hb_000815_230 Hb_073973_120 Hb_073973_120 Hb_002053_050--Hb_073973_120 Hb_000291_180 Hb_000291_180 Hb_160271_010--Hb_000291_180 Hb_000320_190 Hb_000320_190 Hb_160271_010--Hb_000320_190 Hb_156850_100 Hb_156850_100 Hb_160271_010--Hb_156850_100 Hb_002107_050 Hb_002107_050 Hb_160271_010--Hb_002107_050 Hb_160271_010--Hb_000108_020 Hb_004907_090 Hb_004907_090 Hb_005656_070--Hb_004907_090 Hb_007594_080 Hb_007594_080 Hb_005656_070--Hb_007594_080 Hb_005656_070--Hb_022693_130 Hb_004158_050 Hb_004158_050 Hb_005656_070--Hb_004158_050 Hb_000000_310 Hb_000000_310 Hb_000107_250--Hb_000000_310 Hb_000107_250--Hb_073973_120 Hb_003682_070 Hb_003682_070 Hb_000107_250--Hb_003682_070 Hb_004705_160 Hb_004705_160 Hb_000107_250--Hb_004705_160 Hb_002684_020 Hb_002684_020 Hb_000453_030--Hb_002684_020 Hb_001279_020 Hb_001279_020 Hb_000453_030--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000453_030--Hb_001396_020 Hb_006970_020 Hb_006970_020 Hb_000453_030--Hb_006970_020 Hb_004032_320 Hb_004032_320 Hb_000453_030--Hb_004032_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6058 4.29093 13.7122 13.1379 3.63855 6.0317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96328 2.60266 4.35343 3.99687 13.0807

CAGE analysis