Hb_005062_070

Information

Type -
Description -
Location Contig5062: 63302-69732
Sequence    

Annotation

kegg
ID rcu:RCOM_0320810
description RNA splicing protein mrs2, mitochondrial, putative
nr
ID XP_002530669.1
description RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
swissprot
ID Q93ZD7
description Magnesium transporter MRS2-4 OS=Arabidopsis thaliana GN=MRS2-4 PE=2 SV=1
trembl
ID B9SXF0
description RNA splicing protein mrs2, mitochondrial, putative OS=Ricinus communis GN=RCOM_0320810 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter mrs2-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46118: 64256-64846 , PASA_asmbl_46119: 64775-64894 , PASA_asmbl_46120: 64907-69295 , PASA_asmbl_46121: 67427-67701 , PASA_asmbl_46122: 69450-69549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005062_070 0.0 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
2 Hb_001454_210 0.0571338148 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
3 Hb_001030_120 0.0607373368 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
4 Hb_004046_010 0.0615601039 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
5 Hb_000030_010 0.0634967536 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
6 Hb_000190_140 0.063716491 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
7 Hb_009111_050 0.0647847262 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
8 Hb_000421_260 0.0665772077 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
9 Hb_015001_020 0.0683235294 - - PREDICTED: la-related protein 6B [Jatropha curcas]
10 Hb_007951_050 0.0688402334 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_028872_140 0.0719700124 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
12 Hb_015306_020 0.0723168779 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
13 Hb_001635_100 0.0735013006 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
14 Hb_000754_060 0.0736187944 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
15 Hb_000120_950 0.076315239 - - PREDICTED: protein GRIP [Jatropha curcas]
16 Hb_000554_020 0.0765051284 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
17 Hb_000567_260 0.0774428081 - - BnaA09g41440D [Brassica napus]
18 Hb_001671_020 0.0792600003 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
19 Hb_002253_070 0.0808385847 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
20 Hb_004195_160 0.081431149 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]

Gene co-expression network

sample Hb_005062_070 Hb_005062_070 Hb_001454_210 Hb_001454_210 Hb_005062_070--Hb_001454_210 Hb_001030_120 Hb_001030_120 Hb_005062_070--Hb_001030_120 Hb_004046_010 Hb_004046_010 Hb_005062_070--Hb_004046_010 Hb_000030_010 Hb_000030_010 Hb_005062_070--Hb_000030_010 Hb_000190_140 Hb_000190_140 Hb_005062_070--Hb_000190_140 Hb_009111_050 Hb_009111_050 Hb_005062_070--Hb_009111_050 Hb_015306_020 Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_001454_210--Hb_028872_140 Hb_001454_210--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_001454_210--Hb_002811_360 Hb_001454_210--Hb_001030_120 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_001030_120--Hb_028872_140 Hb_004046_010--Hb_015306_020 Hb_002890_340 Hb_002890_340 Hb_004046_010--Hb_002890_340 Hb_002477_160 Hb_002477_160 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080 Hb_000446_090 Hb_000446_090 Hb_004046_010--Hb_000446_090 Hb_000120_950 Hb_000120_950 Hb_000030_010--Hb_000120_950 Hb_003609_040 Hb_003609_040 Hb_000030_010--Hb_003609_040 Hb_007547_010 Hb_007547_010 Hb_000030_010--Hb_007547_010 Hb_001623_420 Hb_001623_420 Hb_000030_010--Hb_001623_420 Hb_000392_300 Hb_000392_300 Hb_000030_010--Hb_000392_300 Hb_000754_060 Hb_000754_060 Hb_000190_140--Hb_000754_060 Hb_000190_140--Hb_000120_950 Hb_000190_140--Hb_009111_050 Hb_000190_140--Hb_001454_210 Hb_000190_140--Hb_015306_020 Hb_009111_050--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_009111_050--Hb_033642_010 Hb_009111_050--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.1923 11.1212 6.14151 5.8893 25.7827 32.2034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.2633 26.4825 33.3141 11.7867 8.74974

CAGE analysis