Hb_005063_010

Information

Type -
Description -
Location Contig5063: 33253-39559
Sequence    

Annotation

kegg
ID rcu:RCOM_0484460
description Wound-induced protein WIN2 precursor, putative
nr
ID AAO63571.1
description HEV1.1 [Hevea brasiliensis]
swissprot
ID P02877
description Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2
trembl
ID Q6JYR0
description HEV1.1 OS=Hevea brasiliensis PE=4 SV=1
Gene Ontology
ID GO:0008061
description wound-induced protein win2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46133: 38908-39579
cDNA
(Sanger)
(ID:Location)		 001_I14.ab1: 38907-39576 , 017_F11.ab1: 38907-39576 , 018_J08.ab1: 38908-39579 , 020_E24.ab1: 38908-39574 , 022_F14.ab1: 38907-39576 , 029_G14.ab1: 38908-39510 , 030_L22.ab1: 38908-39579 , 032_I20.ab1: 38908-39579 , 047_J10.ab1: 38907-39576

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005063_010 0.0 - - HEV1.1 [Hevea brasiliensis]
2 Hb_017134_040 0.0949123008 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
3 Hb_186982_030 0.117403637 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000329_610 0.1213334337 - - conserved hypothetical protein [Ricinus communis]
5 Hb_026048_090 0.1220076739 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002038_060 0.1245171393 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
7 Hb_003627_020 0.126351579 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
8 Hb_000603_220 0.1272357191 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
9 Hb_001911_030 0.1305010866 - - PREDICTED: disease resistance RPP8-like protein 3 [Jatropha curcas]
10 Hb_003786_110 0.1310766745 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
11 Hb_005488_070 0.1317684336 - - putative cytochrome P450 [Oryza sativa Japonica Group]
12 Hb_007317_220 0.1319120503 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
13 Hb_005245_090 0.1320619829 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
14 Hb_000853_370 0.1340124956 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
15 Hb_009510_030 0.1345367554 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
16 Hb_002200_110 0.1354390799 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003656_030 0.1386915727 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
18 Hb_002942_030 0.1390007805 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
19 Hb_007178_010 0.1402099895 - - pseudo-hevein [Hevea brasiliensis]
20 Hb_005730_020 0.1426532687 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005063_010 Hb_005063_010 Hb_017134_040 Hb_017134_040 Hb_005063_010--Hb_017134_040 Hb_186982_030 Hb_186982_030 Hb_005063_010--Hb_186982_030 Hb_000329_610 Hb_000329_610 Hb_005063_010--Hb_000329_610 Hb_026048_090 Hb_026048_090 Hb_005063_010--Hb_026048_090 Hb_002038_060 Hb_002038_060 Hb_005063_010--Hb_002038_060 Hb_003627_020 Hb_003627_020 Hb_005063_010--Hb_003627_020 Hb_005730_020 Hb_005730_020 Hb_017134_040--Hb_005730_020 Hb_002890_220 Hb_002890_220 Hb_017134_040--Hb_002890_220 Hb_017134_040--Hb_000329_610 Hb_007178_010 Hb_007178_010 Hb_017134_040--Hb_007178_010 Hb_003786_110 Hb_003786_110 Hb_017134_040--Hb_003786_110 Hb_000958_010 Hb_000958_010 Hb_186982_030--Hb_000958_010 Hb_000101_170 Hb_000101_170 Hb_186982_030--Hb_000101_170 Hb_002200_110 Hb_002200_110 Hb_186982_030--Hb_002200_110 Hb_004032_240 Hb_004032_240 Hb_186982_030--Hb_004032_240 Hb_001911_030 Hb_001911_030 Hb_186982_030--Hb_001911_030 Hb_000329_610--Hb_003786_110 Hb_000853_370 Hb_000853_370 Hb_000329_610--Hb_000853_370 Hb_001504_170 Hb_001504_170 Hb_000329_610--Hb_001504_170 Hb_180992_010 Hb_180992_010 Hb_000329_610--Hb_180992_010 Hb_003507_020 Hb_003507_020 Hb_000329_610--Hb_003507_020 Hb_009510_030 Hb_009510_030 Hb_026048_090--Hb_009510_030 Hb_127979_010 Hb_127979_010 Hb_026048_090--Hb_127979_010 Hb_000771_140 Hb_000771_140 Hb_026048_090--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_026048_090--Hb_000057_060 Hb_001433_170 Hb_001433_170 Hb_026048_090--Hb_001433_170 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010 Hb_103873_010 Hb_103873_010 Hb_002038_060--Hb_103873_010 Hb_003001_030 Hb_003001_030 Hb_002038_060--Hb_003001_030 Hb_002038_060--Hb_004126_010 Hb_014067_010 Hb_014067_010 Hb_002038_060--Hb_014067_010 Hb_002038_060--Hb_009510_030 Hb_001999_060 Hb_001999_060 Hb_002038_060--Hb_001999_060 Hb_003627_020--Hb_004126_010 Hb_003627_020--Hb_003507_020 Hb_003656_030 Hb_003656_030 Hb_003627_020--Hb_003656_030 Hb_003627_020--Hb_007178_010 Hb_005488_070 Hb_005488_070 Hb_003627_020--Hb_005488_070 Hb_003627_020--Hb_009510_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1849.6 71.0071 3.32564 112.709 2469.05 2551.53
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1583.66 1585.69 1232.28 676.854 4.25662

CAGE analysis