Hb_005063_030

Information

Type -
Description -
Location Contig5063: 57800-58459
Sequence    

Annotation

kegg
ID rcu:RCOM_0484430
description Photosystem II reaction center W protein, chloroplast precursor, putative
nr
ID XP_002531284.1
description Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q41387
description Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1
trembl
ID B9SZ65
description Photosystem II reaction center W protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0484430 PE=4 SV=1
Gene Ontology
ID GO:0009507
description photosystem ii reaction center w chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46136: 57781-58519 , PASA_asmbl_46137: 57814-58512
cDNA
(Sanger)
(ID:Location)		 002_H14.ab1: 57809-58512 , 006_F08.ab1: 57809-58497 , 007_B06.ab1: 57830-58519 , 007_B22.ab1: 57840-58519 , 008_H13.ab1: 57837-58499 , 011_O08.ab1: 57827-58491 , 013_N18.ab1: 57829-58492 , 016_D22.ab1: 57809-58492 , 021_H24.ab1: 57829-58519 , 022_F16.ab1: 57843-58497 , 028_F06.ab1: 57950-58512 , 029_N18.ab1: 57809-58519 , 031_A21.ab1: 57830-58519 , 035_P09.ab1: 57814-58512 , 040_K20.ab1: 57829-58519 , 044_H15.ab1: 57837-58519 , 044_J15.ab1: 57809-58519 , 045_I20.ab1: 57837-58491 , 046_B06.ab1: 57837-58491 , 046_J24.ab1: 57837-58491 , 047_A24.ab1: 57828-58520 , 047_H11.ab1: 57828-58519 , 048_J16.ab1: 57841-58519 , 050_E13.ab1: 57826-58519 , 051_E22.ab1: 57843-58519 , 051_M15.ab1: 57809-58497

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005063_030 0.0 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_001975_100 0.0195210945 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
3 Hb_001564_120 0.040395799 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
4 Hb_000254_130 0.048938512 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
5 Hb_000101_330 0.0536932017 - - -
6 Hb_001292_030 0.0551385044 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
7 Hb_001999_230 0.0559540028 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
8 Hb_000077_380 0.0573844176 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
9 Hb_001006_040 0.0579385106 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
10 Hb_006570_030 0.0581175634 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
11 Hb_005054_120 0.0603326797 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
12 Hb_001958_060 0.0644369244 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
13 Hb_001028_040 0.0652472028 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
14 Hb_007477_060 0.0657749567 - - unknown [Medicago truncatula]
15 Hb_002368_060 0.0661235975 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008225_050 0.0670368942 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
17 Hb_001007_070 0.0673924404 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
18 Hb_000099_120 0.0683466707 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
19 Hb_003777_080 0.0686935761 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
20 Hb_001277_350 0.0694523265 - - early light-induced protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005063_030 Hb_005063_030 Hb_001975_100 Hb_001975_100 Hb_005063_030--Hb_001975_100 Hb_001564_120 Hb_001564_120 Hb_005063_030--Hb_001564_120 Hb_000254_130 Hb_000254_130 Hb_005063_030--Hb_000254_130 Hb_000101_330 Hb_000101_330 Hb_005063_030--Hb_000101_330 Hb_001292_030 Hb_001292_030 Hb_005063_030--Hb_001292_030 Hb_001999_230 Hb_001999_230 Hb_005063_030--Hb_001999_230 Hb_001975_100--Hb_000254_130 Hb_001006_040 Hb_001006_040 Hb_001975_100--Hb_001006_040 Hb_001975_100--Hb_001292_030 Hb_001975_100--Hb_001564_120 Hb_008225_050 Hb_008225_050 Hb_001975_100--Hb_008225_050 Hb_000098_040 Hb_000098_040 Hb_001564_120--Hb_000098_040 Hb_001564_120--Hb_001999_230 Hb_000099_120 Hb_000099_120 Hb_001564_120--Hb_000099_120 Hb_001007_070 Hb_001007_070 Hb_001564_120--Hb_001007_070 Hb_000254_130--Hb_001999_230 Hb_000254_130--Hb_008225_050 Hb_003025_160 Hb_003025_160 Hb_000254_130--Hb_003025_160 Hb_002752_020 Hb_002752_020 Hb_000254_130--Hb_002752_020 Hb_007477_060 Hb_007477_060 Hb_000101_330--Hb_007477_060 Hb_006570_030 Hb_006570_030 Hb_000101_330--Hb_006570_030 Hb_001028_040 Hb_001028_040 Hb_000101_330--Hb_001028_040 Hb_001699_140 Hb_001699_140 Hb_000101_330--Hb_001699_140 Hb_002368_060 Hb_002368_060 Hb_000101_330--Hb_002368_060 Hb_001292_030--Hb_001006_040 Hb_002785_030 Hb_002785_030 Hb_001292_030--Hb_002785_030 Hb_001322_120 Hb_001322_120 Hb_001292_030--Hb_001322_120 Hb_000230_420 Hb_000230_420 Hb_001292_030--Hb_000230_420 Hb_001292_030--Hb_006570_030 Hb_001999_230--Hb_001007_070 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001999_230--Hb_001975_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 69.4607 611.952 305.318 0 0.208289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15961 0.745606 0 10.789 1132.14

CAGE analysis