Hb_005063_050

Information

Type -
Description -
Location Contig5063: 71004-72464
Sequence    

Annotation

kegg
ID rcu:RCOM_0484410
description Prefoldin subunit, putative
nr
ID XP_012089276.1
description PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9M4C4
description Probable prefoldin subunit 4 OS=Avena fatua GN=VIP3 PE=2 SV=1
trembl
ID B9SZ63
description Prefoldin subunit 4 OS=Ricinus communis GN=RCOM_0484410 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable prefoldin subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005063_050 0.0 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
2 Hb_003893_050 0.0538163373 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
3 Hb_008921_020 0.0585352776 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
4 Hb_010672_060 0.0602661632 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
5 Hb_000699_160 0.0632941713 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
6 Hb_000265_050 0.0668295057 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
7 Hb_143496_010 0.0745224796 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
8 Hb_005511_160 0.0774325828 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
9 Hb_003203_040 0.0778472463 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
10 Hb_000567_410 0.0790531892 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
11 Hb_002431_050 0.0797556348 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
12 Hb_000029_200 0.0806577582 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
13 Hb_001141_140 0.0825531879 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
14 Hb_000441_190 0.0827708835 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
15 Hb_011628_040 0.0834194635 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
16 Hb_005181_030 0.0842653874 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
17 Hb_000735_040 0.0857034591 - - 60S ribosomal protein L32A [Hevea brasiliensis]
18 Hb_001085_120 0.0861887494 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
19 Hb_000453_120 0.0873189571 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
20 Hb_002588_010 0.0874566783 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]

Gene co-expression network

sample Hb_005063_050 Hb_005063_050 Hb_003893_050 Hb_003893_050 Hb_005063_050--Hb_003893_050 Hb_008921_020 Hb_008921_020 Hb_005063_050--Hb_008921_020 Hb_010672_060 Hb_010672_060 Hb_005063_050--Hb_010672_060 Hb_000699_160 Hb_000699_160 Hb_005063_050--Hb_000699_160 Hb_000265_050 Hb_000265_050 Hb_005063_050--Hb_000265_050 Hb_143496_010 Hb_143496_010 Hb_005063_050--Hb_143496_010 Hb_000283_110 Hb_000283_110 Hb_003893_050--Hb_000283_110 Hb_002431_050 Hb_002431_050 Hb_003893_050--Hb_002431_050 Hb_003203_040 Hb_003203_040 Hb_003893_050--Hb_003203_040 Hb_003893_050--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_003893_050--Hb_000029_200 Hb_000576_060 Hb_000576_060 Hb_008921_020--Hb_000576_060 Hb_000735_040 Hb_000735_040 Hb_008921_020--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_008921_020--Hb_000062_650 Hb_000506_070 Hb_000506_070 Hb_008921_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_008921_020--Hb_001141_140 Hb_010672_060--Hb_002431_050 Hb_010672_060--Hb_000699_160 Hb_000111_340 Hb_000111_340 Hb_010672_060--Hb_000111_340 Hb_007416_020 Hb_007416_020 Hb_010672_060--Hb_007416_020 Hb_001221_310 Hb_001221_310 Hb_000699_160--Hb_001221_310 Hb_000699_160--Hb_143496_010 Hb_012022_120 Hb_012022_120 Hb_000699_160--Hb_012022_120 Hb_002830_020 Hb_002830_020 Hb_000699_160--Hb_002830_020 Hb_002798_020 Hb_002798_020 Hb_000265_050--Hb_002798_020 Hb_004127_020 Hb_004127_020 Hb_000265_050--Hb_004127_020 Hb_000136_170 Hb_000136_170 Hb_000265_050--Hb_000136_170 Hb_000265_050--Hb_003893_050 Hb_004459_040 Hb_004459_040 Hb_000265_050--Hb_004459_040 Hb_010175_040 Hb_010175_040 Hb_143496_010--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_143496_010--Hb_003226_100 Hb_017491_060 Hb_017491_060 Hb_143496_010--Hb_017491_060 Hb_143496_010--Hb_001141_140 Hb_003018_020 Hb_003018_020 Hb_143496_010--Hb_003018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3299 11.2644 21.8826 32.0434 28.349 28.1217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.3717 123.717 49.3414 20.2901 18.3565

CAGE analysis