Hb_005063_060

Information

Type transcription factor
Description TF Family: GNAT
Location Contig5063: 72630-73967
Sequence    

Annotation

kegg
ID rcu:RCOM_0484400
description N-acetyltransferase, putative
nr
ID XP_012089278.1
description PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23507 PE=4 SV=1
Gene Ontology
ID GO:0008080
description acyl- n-acyltransferases superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46143: 72682-73979 , PASA_asmbl_46144: 72682-73979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005063_060 0.0 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
2 Hb_001775_100 0.0667368697 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
3 Hb_001257_110 0.0921854153 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
4 Hb_002003_130 0.0969891961 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
5 Hb_119600_030 0.0999623146 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
6 Hb_004117_200 0.1095371425 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
7 Hb_001584_210 0.1124278697 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
8 Hb_004128_170 0.1132901725 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
9 Hb_000007_030 0.1237086922 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_074548_010 0.1247494681 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_005523_040 0.1252589578 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
12 Hb_005694_120 0.1280069701 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
13 Hb_000373_160 0.1288068863 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
14 Hb_002852_010 0.1290537331 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_005210_010 0.1302992177 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
16 Hb_001541_280 0.1303820945 - - phosphate transporter [Manihot esculenta]
17 Hb_000077_380 0.131721449 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
18 Hb_002814_010 0.1327881723 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
19 Hb_000847_030 0.1341714304 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
20 Hb_003373_050 0.1343573708 - - receptor protein kinase zmpk1, putative [Ricinus communis]

Gene co-expression network

sample Hb_005063_060 Hb_005063_060 Hb_001775_100 Hb_001775_100 Hb_005063_060--Hb_001775_100 Hb_001257_110 Hb_001257_110 Hb_005063_060--Hb_001257_110 Hb_002003_130 Hb_002003_130 Hb_005063_060--Hb_002003_130 Hb_119600_030 Hb_119600_030 Hb_005063_060--Hb_119600_030 Hb_004117_200 Hb_004117_200 Hb_005063_060--Hb_004117_200 Hb_001584_210 Hb_001584_210 Hb_005063_060--Hb_001584_210 Hb_001775_100--Hb_001257_110 Hb_001775_100--Hb_001584_210 Hb_001775_100--Hb_119600_030 Hb_010080_070 Hb_010080_070 Hb_001775_100--Hb_010080_070 Hb_003905_030 Hb_003905_030 Hb_001775_100--Hb_003905_030 Hb_074548_010 Hb_074548_010 Hb_001257_110--Hb_074548_010 Hb_002799_060 Hb_002799_060 Hb_001257_110--Hb_002799_060 Hb_005523_040 Hb_005523_040 Hb_001257_110--Hb_005523_040 Hb_001257_110--Hb_003905_030 Hb_004128_170 Hb_004128_170 Hb_002003_130--Hb_004128_170 Hb_002003_130--Hb_001584_210 Hb_007044_270 Hb_007044_270 Hb_002003_130--Hb_007044_270 Hb_000077_380 Hb_000077_380 Hb_002003_130--Hb_000077_380 Hb_000098_040 Hb_000098_040 Hb_002003_130--Hb_000098_040 Hb_007904_110 Hb_007904_110 Hb_119600_030--Hb_007904_110 Hb_025557_060 Hb_025557_060 Hb_119600_030--Hb_025557_060 Hb_000373_160 Hb_000373_160 Hb_119600_030--Hb_000373_160 Hb_004979_070 Hb_004979_070 Hb_119600_030--Hb_004979_070 Hb_002852_010 Hb_002852_010 Hb_119600_030--Hb_002852_010 Hb_002701_250 Hb_002701_250 Hb_119600_030--Hb_002701_250 Hb_004117_200--Hb_002852_010 Hb_021531_010 Hb_021531_010 Hb_004117_200--Hb_021531_010 Hb_004117_200--Hb_000077_380 Hb_000460_040 Hb_000460_040 Hb_004117_200--Hb_000460_040 Hb_004117_200--Hb_002003_130 Hb_011344_030 Hb_011344_030 Hb_001584_210--Hb_011344_030 Hb_002333_040 Hb_002333_040 Hb_001584_210--Hb_002333_040 Hb_001584_210--Hb_007044_270 Hb_001517_010 Hb_001517_010 Hb_001584_210--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_001584_210--Hb_001195_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.779466 10.1764 32.0957 21.1973 0.951987 2.15559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.997637 0.330365 0.531056 0.598268 77.0549

CAGE analysis