Hb_005063_080

Information

Type -
Description -
Location Contig5063: 76148-80739
Sequence    

Annotation

kegg
ID rcu:RCOM_0484370
description WD-repeat protein, putative
nr
ID XP_012089280.1
description PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FUY2
description Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2
trembl
ID A0A067JUL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23508 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46145: 76150-77221 , PASA_asmbl_46146: 77626-77937 , PASA_asmbl_46147: 79652-80858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005063_080 0.0 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
2 Hb_005618_150 0.1168791936 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
3 Hb_000665_270 0.1184945585 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
4 Hb_001907_070 0.1227346685 - - 50S ribosomal protein L1p, putative [Ricinus communis]
5 Hb_006911_070 0.1248263067 - - 50S ribosomal protein L1p, putative [Ricinus communis]
6 Hb_006198_130 0.1266647905 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
7 Hb_000336_200 0.1302893225 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_003777_250 0.131354417 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
9 Hb_001220_050 0.1335498132 - - DNA-damage-inducible protein f, putative [Ricinus communis]
10 Hb_000281_070 0.1341690548 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
11 Hb_071079_020 0.1349395227 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
12 Hb_073973_120 0.1353038585 - - zinc finger protein, putative [Ricinus communis]
13 Hb_002005_040 0.136149336 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000260_710 0.1370538707 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
15 Hb_000815_230 0.1384366039 - - conserved hypothetical protein [Ricinus communis]
16 Hb_164926_010 0.1395625824 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
17 Hb_006006_060 0.1404312196 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
18 Hb_001793_050 0.1405077243 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
19 Hb_004055_160 0.1406025888 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
20 Hb_001269_500 0.1408988334 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_005063_080 Hb_005063_080 Hb_005618_150 Hb_005618_150 Hb_005063_080--Hb_005618_150 Hb_000665_270 Hb_000665_270 Hb_005063_080--Hb_000665_270 Hb_001907_070 Hb_001907_070 Hb_005063_080--Hb_001907_070 Hb_006911_070 Hb_006911_070 Hb_005063_080--Hb_006911_070 Hb_006198_130 Hb_006198_130 Hb_005063_080--Hb_006198_130 Hb_000336_200 Hb_000336_200 Hb_005063_080--Hb_000336_200 Hb_005618_150--Hb_001907_070 Hb_008092_050 Hb_008092_050 Hb_005618_150--Hb_008092_050 Hb_164926_010 Hb_164926_010 Hb_005618_150--Hb_164926_010 Hb_001723_030 Hb_001723_030 Hb_005618_150--Hb_001723_030 Hb_006062_030 Hb_006062_030 Hb_005618_150--Hb_006062_030 Hb_004871_010 Hb_004871_010 Hb_005618_150--Hb_004871_010 Hb_000465_440 Hb_000465_440 Hb_000665_270--Hb_000465_440 Hb_001649_030 Hb_001649_030 Hb_000665_270--Hb_001649_030 Hb_000665_270--Hb_000336_200 Hb_001269_500 Hb_001269_500 Hb_000665_270--Hb_001269_500 Hb_000358_040 Hb_000358_040 Hb_000665_270--Hb_000358_040 Hb_009288_040 Hb_009288_040 Hb_000665_270--Hb_009288_040 Hb_001907_070--Hb_006911_070 Hb_005038_030 Hb_005038_030 Hb_001907_070--Hb_005038_030 Hb_000023_370 Hb_000023_370 Hb_001907_070--Hb_000023_370 Hb_001907_070--Hb_004871_010 Hb_001907_070--Hb_001723_030 Hb_000260_710 Hb_000260_710 Hb_006911_070--Hb_000260_710 Hb_001959_240 Hb_001959_240 Hb_006911_070--Hb_001959_240 Hb_031042_060 Hb_031042_060 Hb_006911_070--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_006911_070--Hb_000302_190 Hb_006911_070--Hb_005618_150 Hb_003171_030 Hb_003171_030 Hb_006198_130--Hb_003171_030 Hb_009687_020 Hb_009687_020 Hb_006198_130--Hb_009687_020 Hb_000059_270 Hb_000059_270 Hb_006198_130--Hb_000059_270 Hb_006198_130--Hb_001269_500 Hb_163950_070 Hb_163950_070 Hb_006198_130--Hb_163950_070 Hb_001220_050 Hb_001220_050 Hb_006198_130--Hb_001220_050 Hb_000336_200--Hb_001269_500 Hb_000336_200--Hb_001649_030 Hb_000336_200--Hb_000465_440 Hb_000336_200--Hb_000358_040 Hb_000336_200--Hb_009288_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.52676 6.02047 24.186 22.0623 12.2742 9.04131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38441 3.19538 2.70887 4.2105 40.957

CAGE analysis