Hb_005064_040

Information

Type -
Description -
Location Contig5064: 84243-86873
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02680g
description POPTRDRAFT_563641; hypothetical protein
nr
ID XP_002311042.1
description hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
swissprot
ID F4HW02
description GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1
trembl
ID B9HL45
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02680g PE=4 SV=1
Gene Ontology
ID GO:0016021
description gaba transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46151: 84639-84974 , PASA_asmbl_46152: 85542-85834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005064_040 0.0 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
2 Hb_000081_020 0.055869833 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
3 Hb_000497_120 0.0698957645 - - conserved hypothetical protein [Ricinus communis]
4 Hb_031340_030 0.0778694036 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
5 Hb_000539_080 0.0843667838 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
6 Hb_159015_010 0.0958568401 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_000140_260 0.1068502359 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
8 Hb_027141_010 0.1101225949 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_076895_020 0.1119718638 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
10 Hb_000948_070 0.1123391158 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
11 Hb_000205_210 0.1128450208 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
12 Hb_116478_010 0.1183590807 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
13 Hb_000984_080 0.1208575558 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
14 Hb_002182_050 0.1249836773 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
15 Hb_004200_040 0.1258532068 - - laccase, putative [Ricinus communis]
16 Hb_000487_240 0.130302466 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
17 Hb_005228_170 0.1315816583 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
18 Hb_000487_140 0.134160811 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_001901_010 0.1344126949 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
20 Hb_012807_140 0.1362491034 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]

Gene co-expression network

sample Hb_005064_040 Hb_005064_040 Hb_000081_020 Hb_000081_020 Hb_005064_040--Hb_000081_020 Hb_000497_120 Hb_000497_120 Hb_005064_040--Hb_000497_120 Hb_031340_030 Hb_031340_030 Hb_005064_040--Hb_031340_030 Hb_000539_080 Hb_000539_080 Hb_005064_040--Hb_000539_080 Hb_159015_010 Hb_159015_010 Hb_005064_040--Hb_159015_010 Hb_000140_260 Hb_000140_260 Hb_005064_040--Hb_000140_260 Hb_000081_020--Hb_000539_080 Hb_076895_020 Hb_076895_020 Hb_000081_020--Hb_076895_020 Hb_000081_020--Hb_031340_030 Hb_000238_060 Hb_000238_060 Hb_000081_020--Hb_000238_060 Hb_005228_170 Hb_005228_170 Hb_000081_020--Hb_005228_170 Hb_000497_120--Hb_031340_030 Hb_027141_010 Hb_027141_010 Hb_000497_120--Hb_027141_010 Hb_000497_120--Hb_159015_010 Hb_000497_120--Hb_000140_260 Hb_000205_210 Hb_000205_210 Hb_000497_120--Hb_000205_210 Hb_031340_030--Hb_000539_080 Hb_031340_030--Hb_000140_260 Hb_002999_090 Hb_002999_090 Hb_031340_030--Hb_002999_090 Hb_000539_080--Hb_076895_020 Hb_000948_070 Hb_000948_070 Hb_000539_080--Hb_000948_070 Hb_002110_270 Hb_002110_270 Hb_000539_080--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_000539_080--Hb_006006_070 Hb_000539_080--Hb_027141_010 Hb_116478_010 Hb_116478_010 Hb_159015_010--Hb_116478_010 Hb_002182_050 Hb_002182_050 Hb_159015_010--Hb_002182_050 Hb_000487_240 Hb_000487_240 Hb_159015_010--Hb_000487_240 Hb_000911_050 Hb_000911_050 Hb_159015_010--Hb_000911_050 Hb_004200_040 Hb_004200_040 Hb_000140_260--Hb_004200_040 Hb_000140_260--Hb_000205_210 Hb_000140_260--Hb_027141_010 Hb_000140_260--Hb_076895_020 Hb_000140_260--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_000140_260--Hb_000984_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.17886 0.158667 3.76306 0.0121528 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0232489 0 16.6841 0.682264

CAGE analysis