Hb_005064_060

Information

Type -
Description -
Location Contig5064: 89179-90750
Sequence    

Annotation

kegg
ID rcu:RCOM_0436810
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002530894.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SSR6
description Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1
trembl
ID B9SY25
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0436810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005064_060 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_011218_040 0.0751663002 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
3 Hb_004577_020 0.0822025818 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
4 Hb_010417_080 0.0858319851 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
5 Hb_000260_270 0.0864381434 - - zinc finger protein, putative [Ricinus communis]
6 Hb_035398_020 0.0870294455 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
7 Hb_017224_030 0.0887194011 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
8 Hb_000109_160 0.0909784305 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
9 Hb_002107_030 0.0921051596 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
10 Hb_000062_550 0.0926834262 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
11 Hb_004355_020 0.0927192937 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
12 Hb_007441_200 0.0934375499 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
13 Hb_001252_010 0.0936190616 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
14 Hb_000041_270 0.0945779376 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
15 Hb_000210_180 0.0949710645 - - PREDICTED: protein YLS9-like [Jatropha curcas]
16 Hb_000099_080 0.0953596059 - - kinesin light chain, putative [Ricinus communis]
17 Hb_015292_030 0.0961103514 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
18 Hb_001766_110 0.0977402101 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
19 Hb_011671_430 0.0979332317 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
20 Hb_000571_120 0.0988172253 - - importin beta-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_005064_060 Hb_005064_060 Hb_011218_040 Hb_011218_040 Hb_005064_060--Hb_011218_040 Hb_004577_020 Hb_004577_020 Hb_005064_060--Hb_004577_020 Hb_010417_080 Hb_010417_080 Hb_005064_060--Hb_010417_080 Hb_000260_270 Hb_000260_270 Hb_005064_060--Hb_000260_270 Hb_035398_020 Hb_035398_020 Hb_005064_060--Hb_035398_020 Hb_017224_030 Hb_017224_030 Hb_005064_060--Hb_017224_030 Hb_000629_010 Hb_000629_010 Hb_011218_040--Hb_000629_010 Hb_004355_020 Hb_004355_020 Hb_011218_040--Hb_004355_020 Hb_011218_040--Hb_000260_270 Hb_010931_120 Hb_010931_120 Hb_011218_040--Hb_010931_120 Hb_000123_210 Hb_000123_210 Hb_011218_040--Hb_000123_210 Hb_011671_430 Hb_011671_430 Hb_004577_020--Hb_011671_430 Hb_004577_020--Hb_010417_080 Hb_000853_350 Hb_000853_350 Hb_004577_020--Hb_000853_350 Hb_001936_020 Hb_001936_020 Hb_004577_020--Hb_001936_020 Hb_000853_170 Hb_000853_170 Hb_004577_020--Hb_000853_170 Hb_003952_070 Hb_003952_070 Hb_004577_020--Hb_003952_070 Hb_001221_100 Hb_001221_100 Hb_010417_080--Hb_001221_100 Hb_004046_050 Hb_004046_050 Hb_010417_080--Hb_004046_050 Hb_010417_080--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_010417_080--Hb_039946_020 Hb_000395_190 Hb_000395_190 Hb_000260_270--Hb_000395_190 Hb_005731_130 Hb_005731_130 Hb_000260_270--Hb_005731_130 Hb_004994_220 Hb_004994_220 Hb_000260_270--Hb_004994_220 Hb_000329_470 Hb_000329_470 Hb_000260_270--Hb_000329_470 Hb_002631_060 Hb_002631_060 Hb_000260_270--Hb_002631_060 Hb_000757_060 Hb_000757_060 Hb_035398_020--Hb_000757_060 Hb_000099_080 Hb_000099_080 Hb_035398_020--Hb_000099_080 Hb_001242_060 Hb_001242_060 Hb_035398_020--Hb_001242_060 Hb_003126_050 Hb_003126_050 Hb_035398_020--Hb_003126_050 Hb_000210_180 Hb_000210_180 Hb_035398_020--Hb_000210_180 Hb_001248_060 Hb_001248_060 Hb_035398_020--Hb_001248_060 Hb_011883_010 Hb_011883_010 Hb_017224_030--Hb_011883_010 Hb_000035_320 Hb_000035_320 Hb_017224_030--Hb_000035_320 Hb_002685_110 Hb_002685_110 Hb_017224_030--Hb_002685_110 Hb_005291_030 Hb_005291_030 Hb_017224_030--Hb_005291_030 Hb_003092_040 Hb_003092_040 Hb_017224_030--Hb_003092_040 Hb_000059_330 Hb_000059_330 Hb_017224_030--Hb_000059_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.55586 2.45615 0.745632 1.8006 2.0294 2.81506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98896 3.14316 2.10336 2.56341 1.12244

CAGE analysis