Hb_005066_060

Information

Type -
Description -
Location Contig5066: 43122-43409
Sequence    

Annotation

kegg
ID tcc:TCM_027048
description FAD-binding Berberine family protein, putative
nr
ID XP_007023043.1
description FAD-binding Berberine family protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061G767
description FAD-binding Berberine family protein, putative OS=Theobroma cacao GN=TCM_027048 PE=4 SV=1
Gene Ontology
ID GO:0008762
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005066_060 0.0 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
2 Hb_012136_010 0.000519798 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
3 Hb_006533_010 0.0181616646 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
4 Hb_005563_020 0.0331024118 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
5 Hb_119748_010 0.0369633198 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
6 Hb_019708_010 0.0550997078 - - -
7 Hb_123560_010 0.0552448409 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
8 Hb_038135_010 0.0591387977 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
9 Hb_000560_050 0.0716591823 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
10 Hb_078903_010 0.073190253 - - Osmotin precursor, putative [Ricinus communis]
11 Hb_001652_060 0.0929852243 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
12 Hb_014749_010 0.1113733928 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
13 Hb_007320_050 0.1188892747 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
14 Hb_002184_040 0.121916204 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
15 Hb_041362_010 0.1227406309 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
16 Hb_001142_040 0.1233760523 - - PREDICTED: protein YLS9 [Jatropha curcas]
17 Hb_004162_310 0.1251727572 - - tonoplast intrinsic protein, putative [Ricinus communis]
18 Hb_003857_010 0.1297490755 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008775_050 0.1312617435 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
20 Hb_007926_020 0.1380107304 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]

Gene co-expression network

sample Hb_005066_060 Hb_005066_060 Hb_012136_010 Hb_012136_010 Hb_005066_060--Hb_012136_010 Hb_006533_010 Hb_006533_010 Hb_005066_060--Hb_006533_010 Hb_005563_020 Hb_005563_020 Hb_005066_060--Hb_005563_020 Hb_119748_010 Hb_119748_010 Hb_005066_060--Hb_119748_010 Hb_019708_010 Hb_019708_010 Hb_005066_060--Hb_019708_010 Hb_123560_010 Hb_123560_010 Hb_005066_060--Hb_123560_010 Hb_012136_010--Hb_006533_010 Hb_012136_010--Hb_005563_020 Hb_012136_010--Hb_119748_010 Hb_012136_010--Hb_123560_010 Hb_012136_010--Hb_019708_010 Hb_006533_010--Hb_119748_010 Hb_006533_010--Hb_019708_010 Hb_038135_010 Hb_038135_010 Hb_006533_010--Hb_038135_010 Hb_006533_010--Hb_005563_020 Hb_005563_020--Hb_123560_010 Hb_078903_010 Hb_078903_010 Hb_005563_020--Hb_078903_010 Hb_001652_060 Hb_001652_060 Hb_005563_020--Hb_001652_060 Hb_119748_010--Hb_019708_010 Hb_119748_010--Hb_038135_010 Hb_000560_050 Hb_000560_050 Hb_119748_010--Hb_000560_050 Hb_019708_010--Hb_038135_010 Hb_019708_010--Hb_000560_050 Hb_123560_010--Hb_078903_010 Hb_123560_010--Hb_001652_060 Hb_002184_040 Hb_002184_040 Hb_123560_010--Hb_002184_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.31499 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.83286 0

CAGE analysis