Hb_005074_010

Information

Type -
Description -
Location Contig5074: 9081-9683
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25610g
description POPTRDRAFT_816966; hypothetical protein
nr
ID XP_012085203.1
description PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JR61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17604 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46166: 9100-9643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005074_010 0.0 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
2 Hb_003562_040 0.085326374 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
3 Hb_001913_030 0.0877810941 - - ankyrin repeat protein [Bruguiera gymnorhiza]
4 Hb_002335_010 0.092910351 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
5 Hb_007257_070 0.0986263685 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
6 Hb_028928_020 0.0992145551 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
7 Hb_007007_090 0.10236333 - - phospholipase d beta, putative [Ricinus communis]
8 Hb_144703_010 0.1055378475 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
9 Hb_001269_530 0.1073491071 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_001269_240 0.107792152 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
11 Hb_004324_220 0.109087781 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
12 Hb_000574_230 0.1102320738 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
13 Hb_044624_010 0.1129831946 - - -
14 Hb_001046_040 0.1134005285 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_000427_040 0.1149162421 - - Gibberellin receptor GID1, putative [Ricinus communis]
16 Hb_000813_090 0.1161855908 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
17 Hb_005271_180 0.1164314648 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
18 Hb_026050_010 0.1165549818 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_005034_010 0.1167180852 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_001013_050 0.1172282338 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_005074_010 Hb_005074_010 Hb_003562_040 Hb_003562_040 Hb_005074_010--Hb_003562_040 Hb_001913_030 Hb_001913_030 Hb_005074_010--Hb_001913_030 Hb_002335_010 Hb_002335_010 Hb_005074_010--Hb_002335_010 Hb_007257_070 Hb_007257_070 Hb_005074_010--Hb_007257_070 Hb_028928_020 Hb_028928_020 Hb_005074_010--Hb_028928_020 Hb_007007_090 Hb_007007_090 Hb_005074_010--Hb_007007_090 Hb_005034_010 Hb_005034_010 Hb_003562_040--Hb_005034_010 Hb_001174_030 Hb_001174_030 Hb_003562_040--Hb_001174_030 Hb_005054_280 Hb_005054_280 Hb_003562_040--Hb_005054_280 Hb_175670_010 Hb_175670_010 Hb_003562_040--Hb_175670_010 Hb_003562_040--Hb_007007_090 Hb_000537_090 Hb_000537_090 Hb_001913_030--Hb_000537_090 Hb_001013_080 Hb_001013_080 Hb_001913_030--Hb_001013_080 Hb_001269_530 Hb_001269_530 Hb_001913_030--Hb_001269_530 Hb_001913_030--Hb_002335_010 Hb_000589_330 Hb_000589_330 Hb_001913_030--Hb_000589_330 Hb_000956_100 Hb_000956_100 Hb_002335_010--Hb_000956_100 Hb_027892_050 Hb_027892_050 Hb_002335_010--Hb_027892_050 Hb_000041_160 Hb_000041_160 Hb_002335_010--Hb_000041_160 Hb_002335_010--Hb_001269_530 Hb_000574_230 Hb_000574_230 Hb_007257_070--Hb_000574_230 Hb_001269_240 Hb_001269_240 Hb_007257_070--Hb_001269_240 Hb_026050_010 Hb_026050_010 Hb_007257_070--Hb_026050_010 Hb_007257_070--Hb_028928_020 Hb_003071_050 Hb_003071_050 Hb_007257_070--Hb_003071_050 Hb_033187_020 Hb_033187_020 Hb_028928_020--Hb_033187_020 Hb_002097_130 Hb_002097_130 Hb_028928_020--Hb_002097_130 Hb_006736_040 Hb_006736_040 Hb_028928_020--Hb_006736_040 Hb_000054_140 Hb_000054_140 Hb_028928_020--Hb_000054_140 Hb_024650_010 Hb_024650_010 Hb_028928_020--Hb_024650_010 Hb_002375_080 Hb_002375_080 Hb_007007_090--Hb_002375_080 Hb_001248_170 Hb_001248_170 Hb_007007_090--Hb_001248_170 Hb_001677_120 Hb_001677_120 Hb_007007_090--Hb_001677_120 Hb_007007_090--Hb_000589_330 Hb_006573_280 Hb_006573_280 Hb_007007_090--Hb_006573_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 14.3666 5.91108 12.1658 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.08325 10.0017

CAGE analysis