Hb_005074_030

Information

Type -
Description -
Location Contig5074: 51555-54570
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46170: 51651-53524 , PASA_asmbl_46171: 53580-53887 , PASA_asmbl_46173: 54409-54674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005074_030 0.0 - - -
2 Hb_000430_020 0.0647655263 - - -
3 Hb_001159_110 0.0826294068 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
4 Hb_001123_060 0.0944276782 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
5 Hb_000538_230 0.0979355283 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
6 Hb_000649_130 0.0995683246 - - Polcalcin Jun o, putative [Ricinus communis]
7 Hb_000749_050 0.1004968393 - - mitochondrial thioredoxin [Hevea brasiliensis]
8 Hb_000178_130 0.1005746151 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
9 Hb_000890_150 0.1038262505 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
10 Hb_000215_320 0.1049594929 - - phosphofructokinase [Hevea brasiliensis]
11 Hb_000465_300 0.1075280968 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
12 Hb_034688_020 0.1092048406 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
13 Hb_000329_110 0.1102128063 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
14 Hb_001377_260 0.1103379048 - - protein with unknown function [Ricinus communis]
15 Hb_000614_250 0.1142937282 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
16 Hb_000173_470 0.1149426434 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
17 Hb_002045_070 0.118470582 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
18 Hb_002042_130 0.1192290115 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
19 Hb_033594_080 0.1207676793 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
20 Hb_003389_040 0.121218944 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]

Gene co-expression network

sample Hb_005074_030 Hb_005074_030 Hb_000430_020 Hb_000430_020 Hb_005074_030--Hb_000430_020 Hb_001159_110 Hb_001159_110 Hb_005074_030--Hb_001159_110 Hb_001123_060 Hb_001123_060 Hb_005074_030--Hb_001123_060 Hb_000538_230 Hb_000538_230 Hb_005074_030--Hb_000538_230 Hb_000649_130 Hb_000649_130 Hb_005074_030--Hb_000649_130 Hb_000749_050 Hb_000749_050 Hb_005074_030--Hb_000749_050 Hb_000430_020--Hb_000538_230 Hb_015807_150 Hb_015807_150 Hb_000430_020--Hb_015807_150 Hb_000890_150 Hb_000890_150 Hb_000430_020--Hb_000890_150 Hb_000430_020--Hb_001159_110 Hb_000178_130 Hb_000178_130 Hb_000430_020--Hb_000178_130 Hb_000230_390 Hb_000230_390 Hb_001159_110--Hb_000230_390 Hb_000614_250 Hb_000614_250 Hb_001159_110--Hb_000614_250 Hb_004453_050 Hb_004453_050 Hb_001159_110--Hb_004453_050 Hb_007508_090 Hb_007508_090 Hb_001159_110--Hb_007508_090 Hb_010423_030 Hb_010423_030 Hb_001123_060--Hb_010423_030 Hb_000329_340 Hb_000329_340 Hb_001123_060--Hb_000329_340 Hb_001278_100 Hb_001278_100 Hb_001123_060--Hb_001278_100 Hb_000032_380 Hb_000032_380 Hb_001123_060--Hb_000032_380 Hb_003389_040 Hb_003389_040 Hb_001123_060--Hb_003389_040 Hb_001030_020 Hb_001030_020 Hb_001123_060--Hb_001030_020 Hb_000215_320 Hb_000215_320 Hb_000538_230--Hb_000215_320 Hb_000538_230--Hb_001159_110 Hb_001205_240 Hb_001205_240 Hb_000538_230--Hb_001205_240 Hb_003761_010 Hb_003761_010 Hb_000538_230--Hb_003761_010 Hb_000210_010 Hb_000210_010 Hb_000649_130--Hb_000210_010 Hb_000649_130--Hb_000178_130 Hb_000327_380 Hb_000327_380 Hb_000649_130--Hb_000327_380 Hb_116608_010 Hb_116608_010 Hb_000649_130--Hb_116608_010 Hb_007943_050 Hb_007943_050 Hb_000649_130--Hb_007943_050 Hb_000465_300 Hb_000465_300 Hb_000749_050--Hb_000465_300 Hb_002045_070 Hb_002045_070 Hb_000749_050--Hb_002045_070 Hb_000173_470 Hb_000173_470 Hb_000749_050--Hb_000173_470 Hb_000749_050--Hb_000890_150 Hb_000749_050--Hb_000215_320 Hb_011218_090 Hb_011218_090 Hb_000749_050--Hb_011218_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.04988 12.739 4.67845 13.7248 3.89891 5.57249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.34837 15.0256 11.9859 7.13438 3.50313

CAGE analysis