Hb_005074_040

Information

Type -
Description -
Location Contig5074: 56158-63373
Sequence    

Annotation

kegg
ID rcu:RCOM_0995950
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_002533625.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q8RWW0
description Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1
trembl
ID B9T5V6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0995950 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like serine threonine-protein kinase ale2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46174: 56163-63243 , PASA_asmbl_46175: 56190-63354 , PASA_asmbl_46176: 57039-57242 , PASA_asmbl_46177: 58117-58229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005074_040 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_014497_010 0.0749921158 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
3 Hb_000139_300 0.0818958678 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
4 Hb_000012_080 0.0885559223 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
5 Hb_000689_050 0.089279134 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000086_210 0.0898847863 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_008025_010 0.0914922484 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
8 Hb_000327_360 0.1033537716 - - unnamed protein product [Coffea canephora]
9 Hb_003929_180 0.1036442883 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
10 Hb_000152_440 0.1067940364 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
11 Hb_000049_160 0.1073506682 - - tyrosine decarboxylase family protein [Populus trichocarpa]
12 Hb_000749_020 0.1099500405 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
13 Hb_006829_060 0.1124101303 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
14 Hb_026549_070 0.1128739194 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
15 Hb_006351_020 0.1132045995 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
16 Hb_001195_660 0.1133674241 - - metalloendopeptidase, putative [Ricinus communis]
17 Hb_006120_060 0.1135051494 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
18 Hb_000566_010 0.1136677462 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_002687_160 0.1140790863 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
20 Hb_004223_140 0.1141961566 - - endo-1,4-beta-glucanase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005074_040 Hb_005074_040 Hb_014497_010 Hb_014497_010 Hb_005074_040--Hb_014497_010 Hb_000139_300 Hb_000139_300 Hb_005074_040--Hb_000139_300 Hb_000012_080 Hb_000012_080 Hb_005074_040--Hb_000012_080 Hb_000689_050 Hb_000689_050 Hb_005074_040--Hb_000689_050 Hb_000086_210 Hb_000086_210 Hb_005074_040--Hb_000086_210 Hb_008025_010 Hb_008025_010 Hb_005074_040--Hb_008025_010 Hb_014497_010--Hb_008025_010 Hb_014497_010--Hb_000689_050 Hb_000025_540 Hb_000025_540 Hb_014497_010--Hb_000025_540 Hb_002942_230 Hb_002942_230 Hb_014497_010--Hb_002942_230 Hb_001411_130 Hb_001411_130 Hb_014497_010--Hb_001411_130 Hb_000139_300--Hb_000086_210 Hb_026549_070 Hb_026549_070 Hb_000139_300--Hb_026549_070 Hb_004306_110 Hb_004306_110 Hb_000139_300--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_000139_300--Hb_009079_050 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150 Hb_006829_060 Hb_006829_060 Hb_000012_080--Hb_006829_060 Hb_000057_110 Hb_000057_110 Hb_000012_080--Hb_000057_110 Hb_001188_100 Hb_001188_100 Hb_000012_080--Hb_001188_100 Hb_000665_180 Hb_000665_180 Hb_000012_080--Hb_000665_180 Hb_000395_110 Hb_000395_110 Hb_000012_080--Hb_000395_110 Hb_003050_360 Hb_003050_360 Hb_000689_050--Hb_003050_360 Hb_000996_080 Hb_000996_080 Hb_000689_050--Hb_000996_080 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_004545_080 Hb_004545_080 Hb_000689_050--Hb_004545_080 Hb_000152_440 Hb_000152_440 Hb_000086_210--Hb_000152_440 Hb_000749_020 Hb_000749_020 Hb_000086_210--Hb_000749_020 Hb_005563_010 Hb_005563_010 Hb_000086_210--Hb_005563_010 Hb_000935_040 Hb_000935_040 Hb_000086_210--Hb_000935_040 Hb_003058_100 Hb_003058_100 Hb_008025_010--Hb_003058_100 Hb_003929_180 Hb_003929_180 Hb_008025_010--Hb_003929_180 Hb_008025_010--Hb_002942_230 Hb_003540_080 Hb_003540_080 Hb_008025_010--Hb_003540_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12972 2.82504 12.2993 16.578 1.88607 2.19873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24496 2.31875 3.05888 4.51973 11.675

CAGE analysis