Hb_005074_050

Information

Type -
Description -
Location Contig5074: 78466-93049
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25560g
description POPTRDRAFT_553274; myosin heavy chain family protein
nr
ID XP_012085186.1
description PREDICTED: myosin-6-like [Jatropha curcas]
swissprot
ID Q9LKB9
description Myosin-6 OS=Arabidopsis thaliana GN=XI-2 PE=1 SV=1
trembl
ID A0A067K2E4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17598 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin-j heavy chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46178: 83391-85983 , PASA_asmbl_46179: 83412-83717 , PASA_asmbl_46180: 86307-92753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005074_050 0.0 - - PREDICTED: myosin-6-like [Jatropha curcas]
2 Hb_148146_010 0.0958415045 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
3 Hb_004837_210 0.0983879659 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
4 Hb_003683_030 0.1060704437 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
5 Hb_003664_030 0.1112641571 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
6 Hb_003640_050 0.1142560842 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_000056_310 0.1164341381 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
8 Hb_000446_040 0.1195108418 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
9 Hb_000749_200 0.1218379695 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
10 Hb_001021_210 0.1254644973 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_027445_100 0.1275473777 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
12 Hb_001953_100 0.1282508319 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
13 Hb_002928_030 0.1284667264 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
14 Hb_173660_010 0.1290435714 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
15 Hb_153553_040 0.1290607536 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
16 Hb_000934_260 0.1314354956 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_003752_090 0.1316274684 - - chitinase, putative [Ricinus communis]
18 Hb_000094_100 0.1318819486 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
19 Hb_000402_020 0.1321758194 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001689_050 0.1334683614 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]

Gene co-expression network

sample Hb_005074_050 Hb_005074_050 Hb_148146_010 Hb_148146_010 Hb_005074_050--Hb_148146_010 Hb_004837_210 Hb_004837_210 Hb_005074_050--Hb_004837_210 Hb_003683_030 Hb_003683_030 Hb_005074_050--Hb_003683_030 Hb_003664_030 Hb_003664_030 Hb_005074_050--Hb_003664_030 Hb_003640_050 Hb_003640_050 Hb_005074_050--Hb_003640_050 Hb_000056_310 Hb_000056_310 Hb_005074_050--Hb_000056_310 Hb_148146_010--Hb_000056_310 Hb_000684_430 Hb_000684_430 Hb_148146_010--Hb_000684_430 Hb_005116_100 Hb_005116_100 Hb_148146_010--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_148146_010--Hb_001959_060 Hb_148146_010--Hb_004837_210 Hb_002928_030 Hb_002928_030 Hb_148146_010--Hb_002928_030 Hb_004837_210--Hb_003683_030 Hb_000094_100 Hb_000094_100 Hb_004837_210--Hb_000094_100 Hb_012779_080 Hb_012779_080 Hb_004837_210--Hb_012779_080 Hb_004837_210--Hb_002928_030 Hb_000749_200 Hb_000749_200 Hb_003683_030--Hb_000749_200 Hb_001689_050 Hb_001689_050 Hb_003683_030--Hb_001689_050 Hb_003894_060 Hb_003894_060 Hb_003683_030--Hb_003894_060 Hb_001250_040 Hb_001250_040 Hb_003683_030--Hb_001250_040 Hb_001953_100 Hb_001953_100 Hb_003683_030--Hb_001953_100 Hb_000264_280 Hb_000264_280 Hb_003664_030--Hb_000264_280 Hb_003948_020 Hb_003948_020 Hb_003664_030--Hb_003948_020 Hb_005784_030 Hb_005784_030 Hb_003664_030--Hb_005784_030 Hb_003664_030--Hb_148146_010 Hb_003752_090 Hb_003752_090 Hb_003664_030--Hb_003752_090 Hb_000834_060 Hb_000834_060 Hb_003664_030--Hb_000834_060 Hb_000076_250 Hb_000076_250 Hb_003640_050--Hb_000076_250 Hb_000996_080 Hb_000996_080 Hb_003640_050--Hb_000996_080 Hb_005665_090 Hb_005665_090 Hb_003640_050--Hb_005665_090 Hb_003160_070 Hb_003160_070 Hb_003640_050--Hb_003160_070 Hb_001141_050 Hb_001141_050 Hb_003640_050--Hb_001141_050 Hb_006252_030 Hb_006252_030 Hb_000056_310--Hb_006252_030 Hb_005618_080 Hb_005618_080 Hb_000056_310--Hb_005618_080 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_000056_310--Hb_001953_100 Hb_000056_310--Hb_000749_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10698 5.88304 19.3656 6.77846 1.86341 1.9314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73641 0.900576 1.84756 1.97801 15.9349

CAGE analysis