Hb_005078_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig5078: 29752-31511
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28800g
description putative disease resistance gene NBS-LRR family protein
nr
ID XP_006382142.1
description putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID U5GCE5
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0006s28800g PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein at4g27190-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005078_040 0.0 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
2 Hb_002662_100 0.1136756108 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
3 Hb_004586_190 0.1203572339 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
4 Hb_000463_040 0.1221284949 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
5 Hb_003638_030 0.1307362265 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
6 Hb_002007_270 0.1420283405 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
7 Hb_026048_100 0.1454418259 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
8 Hb_000035_380 0.1465736023 - - -
9 Hb_000371_110 0.1471027654 - - -
10 Hb_066807_010 0.1479890973 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
11 Hb_002207_100 0.1506577394 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
12 Hb_002038_060 0.1516352051 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
13 Hb_162275_010 0.153208719 - - -
14 Hb_032531_030 0.1537339567 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
15 Hb_000805_090 0.1544972461 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
16 Hb_001366_220 0.155052942 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001842_070 0.1568689349 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
18 Hb_011174_070 0.1583307052 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
19 Hb_000085_310 0.1585407788 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
20 Hb_009026_050 0.1592115775 - - vacuolar ATPase F subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_005078_040 Hb_005078_040 Hb_002662_100 Hb_002662_100 Hb_005078_040--Hb_002662_100 Hb_004586_190 Hb_004586_190 Hb_005078_040--Hb_004586_190 Hb_000463_040 Hb_000463_040 Hb_005078_040--Hb_000463_040 Hb_003638_030 Hb_003638_030 Hb_005078_040--Hb_003638_030 Hb_002007_270 Hb_002007_270 Hb_005078_040--Hb_002007_270 Hb_026048_100 Hb_026048_100 Hb_005078_040--Hb_026048_100 Hb_000313_380 Hb_000313_380 Hb_002662_100--Hb_000313_380 Hb_001366_220 Hb_001366_220 Hb_002662_100--Hb_001366_220 Hb_000085_310 Hb_000085_310 Hb_002662_100--Hb_000085_310 Hb_000809_040 Hb_000809_040 Hb_002662_100--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002662_100--Hb_009026_050 Hb_001366_230 Hb_001366_230 Hb_002662_100--Hb_001366_230 Hb_000172_400 Hb_000172_400 Hb_004586_190--Hb_000172_400 Hb_004586_190--Hb_003638_030 Hb_002207_100 Hb_002207_100 Hb_004586_190--Hb_002207_100 Hb_004586_190--Hb_002007_270 Hb_000371_110 Hb_000371_110 Hb_004586_190--Hb_000371_110 Hb_004586_190--Hb_026048_100 Hb_000463_040--Hb_002007_270 Hb_000977_080 Hb_000977_080 Hb_000463_040--Hb_000977_080 Hb_000260_050 Hb_000260_050 Hb_000463_040--Hb_000260_050 Hb_007747_090 Hb_007747_090 Hb_000463_040--Hb_007747_090 Hb_000576_030 Hb_000576_030 Hb_000463_040--Hb_000576_030 Hb_003638_030--Hb_002207_100 Hb_000805_090 Hb_000805_090 Hb_003638_030--Hb_000805_090 Hb_003638_030--Hb_026048_100 Hb_003638_030--Hb_000172_400 Hb_162275_010 Hb_162275_010 Hb_003638_030--Hb_162275_010 Hb_000700_090 Hb_000700_090 Hb_003638_030--Hb_000700_090 Hb_004852_030 Hb_004852_030 Hb_002007_270--Hb_004852_030 Hb_001538_010 Hb_001538_010 Hb_002007_270--Hb_001538_010 Hb_002007_270--Hb_026048_100 Hb_000622_310 Hb_000622_310 Hb_002007_270--Hb_000622_310 Hb_003297_030 Hb_003297_030 Hb_002007_270--Hb_003297_030 Hb_002007_270--Hb_000172_400 Hb_066807_010 Hb_066807_010 Hb_026048_100--Hb_066807_010 Hb_006602_020 Hb_006602_020 Hb_026048_100--Hb_006602_020 Hb_026048_100--Hb_000700_090 Hb_000057_060 Hb_000057_060 Hb_026048_100--Hb_000057_060 Hb_026048_100--Hb_000172_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193276 0.0740208 0.00922497 0 0.331227 0.343196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.187516 0.316144 0.278506 0.0671886 0.0443219

CAGE analysis