Hb_005080_020

Information

Type -
Description -
Location Contig5080: 30707-35555
Sequence    

Annotation

kegg
ID rcu:RCOM_0513180
description serine/threonine-protein kinase cx32, putative (EC:2.7.10.2)
nr
ID XP_002527153.1
description serine/threonine-protein kinase cx32, putative [Ricinus communis]
swissprot
ID P27450
description Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2
trembl
ID B9SMD4
description Serine/threonine-protein kinase cx32, putative OS=Ricinus communis GN=RCOM_0513180 PE=3 SV=1
Gene Ontology
ID GO:0005886
description probable serine threonine-protein kinase nak

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46186: 35289-35595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005080_020 0.0 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
2 Hb_048476_040 0.1056476833 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
3 Hb_001369_020 0.1075236293 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
4 Hb_132840_020 0.1083677772 - - PREDICTED: protein LHY [Jatropha curcas]
5 Hb_001623_410 0.1127447762 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
6 Hb_000009_150 0.1142618509 - - carbohydrate transporter, putative [Ricinus communis]
7 Hb_000329_790 0.1238400876 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
8 Hb_003905_040 0.1250167652 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
9 Hb_003430_070 0.1269332303 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
10 Hb_001102_200 0.1279080584 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
11 Hb_001294_050 0.1304169421 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
12 Hb_009476_110 0.1305361108 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
13 Hb_178818_010 0.130947669 - - CRINKLY4 related 3, putative [Theobroma cacao]
14 Hb_001318_140 0.1335516147 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
15 Hb_007193_030 0.1338145975 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
16 Hb_001357_060 0.1384494296 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
17 Hb_001179_010 0.139185494 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
18 Hb_006052_060 0.1393892865 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
19 Hb_005375_070 0.1401502089 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
20 Hb_001898_130 0.1406925691 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005080_020 Hb_005080_020 Hb_048476_040 Hb_048476_040 Hb_005080_020--Hb_048476_040 Hb_001369_020 Hb_001369_020 Hb_005080_020--Hb_001369_020 Hb_132840_020 Hb_132840_020 Hb_005080_020--Hb_132840_020 Hb_001623_410 Hb_001623_410 Hb_005080_020--Hb_001623_410 Hb_000009_150 Hb_000009_150 Hb_005080_020--Hb_000009_150 Hb_000329_790 Hb_000329_790 Hb_005080_020--Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_048476_040--Hb_005064_070 Hb_048476_040--Hb_132840_020 Hb_048476_040--Hb_000329_790 Hb_054865_050 Hb_054865_050 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050 Hb_073171_050 Hb_073171_050 Hb_001369_020--Hb_073171_050 Hb_007193_030 Hb_007193_030 Hb_001369_020--Hb_007193_030 Hb_028285_020 Hb_028285_020 Hb_001369_020--Hb_028285_020 Hb_001369_020--Hb_001623_410 Hb_003905_040 Hb_003905_040 Hb_001369_020--Hb_003905_040 Hb_132840_020--Hb_001294_050 Hb_000086_640 Hb_000086_640 Hb_132840_020--Hb_000086_640 Hb_011381_070 Hb_011381_070 Hb_132840_020--Hb_011381_070 Hb_001627_010 Hb_001627_010 Hb_132840_020--Hb_001627_010 Hb_132840_020--Hb_000329_790 Hb_000086_620 Hb_000086_620 Hb_001623_410--Hb_000086_620 Hb_001623_410--Hb_007193_030 Hb_000985_140 Hb_000985_140 Hb_001623_410--Hb_000985_140 Hb_001623_410--Hb_073171_050 Hb_003078_070 Hb_003078_070 Hb_001623_410--Hb_003078_070 Hb_003430_070 Hb_003430_070 Hb_000009_150--Hb_003430_070 Hb_001433_160 Hb_001433_160 Hb_000009_150--Hb_001433_160 Hb_004032_090 Hb_004032_090 Hb_000009_150--Hb_004032_090 Hb_000009_150--Hb_000329_790 Hb_000009_150--Hb_048476_040 Hb_000329_790--Hb_005064_070 Hb_009449_100 Hb_009449_100 Hb_000329_790--Hb_009449_100 Hb_001179_010 Hb_001179_010 Hb_000329_790--Hb_001179_010 Hb_000366_050 Hb_000366_050 Hb_000329_790--Hb_000366_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.20954 10.5076 8.17222 4.84633 0.105879 0.309196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.59136 0.553881 1.25286 2.54394 4.18645

CAGE analysis