Hb_005081_020

Information

Type -
Description -
Location Contig5081: 5856-12576
Sequence    

Annotation

kegg
ID rcu:RCOM_1050740
description hypothetical protein
nr
ID XP_012076760.1
description PREDICTED: ninja-family protein mc410 [Jatropha curcas]
swissprot
ID Q53HY2
description Ninja-family protein mc410 OS=Nicotiana tabacum GN=MC410 PE=2 SV=1
trembl
ID A0A067KN91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07291 PE=4 SV=1
Gene Ontology
ID GO:0050794
description ninja-family protein mc410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46192: 7510-7763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005081_020 0.0 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
2 Hb_083799_010 0.0818550334 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000692_160 0.0832743128 - - Transportin 1 isoform 1 [Theobroma cacao]
4 Hb_075315_010 0.0859163291 - - ornithine aminotransferase [Camellia sinensis]
5 Hb_002391_210 0.0903696415 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
6 Hb_001269_140 0.0904616848 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
7 Hb_003906_170 0.0922163215 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_007441_280 0.0988042088 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
9 Hb_001105_160 0.1035369589 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
10 Hb_039946_050 0.1047136047 - - catalytic, putative [Ricinus communis]
11 Hb_000395_220 0.1053265811 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
12 Hb_007426_140 0.1062972511 - - ornithine aminotransferase, putative [Ricinus communis]
13 Hb_005663_110 0.1069941073 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
14 Hb_003544_030 0.1071135254 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
15 Hb_000327_250 0.1071276503 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
16 Hb_049436_010 0.1076568014 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
17 Hb_001497_060 0.1087642426 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
18 Hb_179306_020 0.1090747226 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
19 Hb_003055_040 0.1094736289 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
20 Hb_011287_010 0.1098960709 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005081_020 Hb_005081_020 Hb_083799_010 Hb_083799_010 Hb_005081_020--Hb_083799_010 Hb_000692_160 Hb_000692_160 Hb_005081_020--Hb_000692_160 Hb_075315_010 Hb_075315_010 Hb_005081_020--Hb_075315_010 Hb_002391_210 Hb_002391_210 Hb_005081_020--Hb_002391_210 Hb_001269_140 Hb_001269_140 Hb_005081_020--Hb_001269_140 Hb_003906_170 Hb_003906_170 Hb_005081_020--Hb_003906_170 Hb_002272_170 Hb_002272_170 Hb_083799_010--Hb_002272_170 Hb_000395_220 Hb_000395_220 Hb_083799_010--Hb_000395_220 Hb_083799_010--Hb_075315_010 Hb_007426_140 Hb_007426_140 Hb_083799_010--Hb_007426_140 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_000692_160--Hb_003906_170 Hb_000692_160--Hb_083799_010 Hb_001009_080 Hb_001009_080 Hb_000692_160--Hb_001009_080 Hb_000692_160--Hb_075315_010 Hb_000692_160--Hb_002272_170 Hb_039946_050 Hb_039946_050 Hb_075315_010--Hb_039946_050 Hb_004450_070 Hb_004450_070 Hb_075315_010--Hb_004450_070 Hb_007747_170 Hb_007747_170 Hb_075315_010--Hb_007747_170 Hb_001105_160 Hb_001105_160 Hb_075315_010--Hb_001105_160 Hb_172632_110 Hb_172632_110 Hb_002391_210--Hb_172632_110 Hb_002400_410 Hb_002400_410 Hb_002391_210--Hb_002400_410 Hb_001761_130 Hb_001761_130 Hb_002391_210--Hb_001761_130 Hb_007747_080 Hb_007747_080 Hb_002391_210--Hb_007747_080 Hb_001021_080 Hb_001021_080 Hb_002391_210--Hb_001021_080 Hb_002307_280 Hb_002307_280 Hb_001269_140--Hb_002307_280 Hb_001269_140--Hb_001761_130 Hb_001269_140--Hb_001105_160 Hb_001434_080 Hb_001434_080 Hb_001269_140--Hb_001434_080 Hb_001123_050 Hb_001123_050 Hb_001269_140--Hb_001123_050 Hb_000159_120 Hb_000159_120 Hb_003906_170--Hb_000159_120 Hb_003906_170--Hb_083799_010 Hb_000327_250 Hb_000327_250 Hb_003906_170--Hb_000327_250 Hb_003906_170--Hb_075315_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.195 21.4273 11.3051 22.7101 9.4312 19.2657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5457 8.92989 13.6642 42.7829 12.5249

CAGE analysis