Hb_005081_040

Information

Type -
Description -
Location Contig5081: 24705-29391
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005081_040 0.0 - - -
2 Hb_028755_010 0.2667633365 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
3 Hb_159555_010 0.276536813 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
4 Hb_010317_020 0.2873478866 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
5 Hb_023323_010 0.2876958915 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
6 Hb_009973_020 0.2988094958 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
7 Hb_021068_010 0.3002843542 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
8 Hb_005989_010 0.3042126751 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
9 Hb_002506_100 0.3101748992 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
10 Hb_183574_010 0.3148998885 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
11 Hb_000284_100 0.3172285442 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
12 Hb_012490_100 0.3352152108 - - -
13 Hb_087340_010 0.3360881554 - - conserved hypothetical protein [Ricinus communis]
14 Hb_032920_100 0.337439632 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
15 Hb_001678_020 0.3381549121 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
16 Hb_005656_060 0.3530115679 - - -
17 Hb_006960_010 0.353179563 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000384_040 0.3539189625 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
19 Hb_004449_240 0.3550140073 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
20 Hb_000732_280 0.3560215215 - - hypothetical protein B456_009G173700 [Gossypium raimondii]

Gene co-expression network

sample Hb_005081_040 Hb_005081_040 Hb_028755_010 Hb_028755_010 Hb_005081_040--Hb_028755_010 Hb_159555_010 Hb_159555_010 Hb_005081_040--Hb_159555_010 Hb_010317_020 Hb_010317_020 Hb_005081_040--Hb_010317_020 Hb_023323_010 Hb_023323_010 Hb_005081_040--Hb_023323_010 Hb_009973_020 Hb_009973_020 Hb_005081_040--Hb_009973_020 Hb_021068_010 Hb_021068_010 Hb_005081_040--Hb_021068_010 Hb_007545_020 Hb_007545_020 Hb_028755_010--Hb_007545_020 Hb_001846_050 Hb_001846_050 Hb_028755_010--Hb_001846_050 Hb_062482_010 Hb_062482_010 Hb_028755_010--Hb_062482_010 Hb_168343_010 Hb_168343_010 Hb_028755_010--Hb_168343_010 Hb_164370_010 Hb_164370_010 Hb_028755_010--Hb_164370_010 Hb_159555_010--Hb_010317_020 Hb_159555_010--Hb_009973_020 Hb_049483_010 Hb_049483_010 Hb_159555_010--Hb_049483_010 Hb_159555_010--Hb_023323_010 Hb_012181_010 Hb_012181_010 Hb_159555_010--Hb_012181_010 Hb_001506_010 Hb_001506_010 Hb_010317_020--Hb_001506_010 Hb_000101_160 Hb_000101_160 Hb_010317_020--Hb_000101_160 Hb_001678_020 Hb_001678_020 Hb_010317_020--Hb_001678_020 Hb_005656_060 Hb_005656_060 Hb_010317_020--Hb_005656_060 Hb_003881_050 Hb_003881_050 Hb_010317_020--Hb_003881_050 Hb_005989_010 Hb_005989_010 Hb_023323_010--Hb_005989_010 Hb_023323_010--Hb_009973_020 Hb_047661_010 Hb_047661_010 Hb_023323_010--Hb_047661_010 Hb_023323_010--Hb_001678_020 Hb_000322_110 Hb_000322_110 Hb_023323_010--Hb_000322_110 Hb_023323_010--Hb_005656_060 Hb_009973_020--Hb_047661_010 Hb_009973_020--Hb_005989_010 Hb_009973_020--Hb_021068_010 Hb_009973_020--Hb_001678_020 Hb_001019_120 Hb_001019_120 Hb_021068_010--Hb_001019_120 Hb_032920_100 Hb_032920_100 Hb_021068_010--Hb_032920_100 Hb_183574_010 Hb_183574_010 Hb_021068_010--Hb_183574_010 Hb_004361_020 Hb_004361_020 Hb_021068_010--Hb_004361_020 Hb_001709_130 Hb_001709_130 Hb_021068_010--Hb_001709_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0815346 0.168226 1.47778 2.46252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.835633 0.309116 0.915929

CAGE analysis