Hb_005085_020

Information

Type -
Description -
Location Contig5085: 16100-18234
Sequence    

Annotation

kegg
ID mdm:103404990
description N-acetyltransferase 9-like
nr
ID KJB07150.1
description hypothetical protein B456_001G193200 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2QIU5
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G193200 PE=4 SV=1
Gene Ontology
ID GO:0016740
description n-acetyltransferase 9-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46213: 16074-49872 , PASA_asmbl_46214: 16074-48695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005085_020 0.0 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
2 Hb_000976_260 0.1106218986 - - -
3 Hb_001142_050 0.1112086614 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
4 Hb_011013_010 0.1160187024 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
5 Hb_000012_020 0.1180965614 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
6 Hb_001488_340 0.1203326466 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
7 Hb_001910_020 0.1213424966 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
8 Hb_000785_030 0.1239939433 - - hypothetical protein RCOM_0808030 [Ricinus communis]
9 Hb_141532_010 0.1242338404 - - PREDICTED: protein SMG9-like [Jatropha curcas]
10 Hb_001882_040 0.1244996303 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
11 Hb_001863_260 0.125778518 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000025_050 0.1265691615 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
13 Hb_000392_050 0.1284769745 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
14 Hb_001105_010 0.1284997663 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
15 Hb_002530_010 0.1322861718 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
16 Hb_008556_030 0.1360093522 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
17 Hb_152453_010 0.1360611121 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
18 Hb_007313_090 0.1362041799 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000175_090 0.1363737477 - - conserved hypothetical protein [Ricinus communis]
20 Hb_035318_010 0.1365385413 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]

Gene co-expression network

sample Hb_005085_020 Hb_005085_020 Hb_000976_260 Hb_000976_260 Hb_005085_020--Hb_000976_260 Hb_001142_050 Hb_001142_050 Hb_005085_020--Hb_001142_050 Hb_011013_010 Hb_011013_010 Hb_005085_020--Hb_011013_010 Hb_000012_020 Hb_000012_020 Hb_005085_020--Hb_000012_020 Hb_001488_340 Hb_001488_340 Hb_005085_020--Hb_001488_340 Hb_001910_020 Hb_001910_020 Hb_005085_020--Hb_001910_020 Hb_000976_260--Hb_001142_050 Hb_000976_260--Hb_000012_020 Hb_004363_010 Hb_004363_010 Hb_000976_260--Hb_004363_010 Hb_000261_250 Hb_000261_250 Hb_000976_260--Hb_000261_250 Hb_000661_140 Hb_000661_140 Hb_000976_260--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_000976_260--Hb_002639_150 Hb_001142_050--Hb_000012_020 Hb_011848_010 Hb_011848_010 Hb_001142_050--Hb_011848_010 Hb_001142_050--Hb_000261_250 Hb_009222_010 Hb_009222_010 Hb_001142_050--Hb_009222_010 Hb_003467_010 Hb_003467_010 Hb_001142_050--Hb_003467_010 Hb_011013_010--Hb_000661_140 Hb_011013_010--Hb_002639_150 Hb_012725_070 Hb_012725_070 Hb_011013_010--Hb_012725_070 Hb_005288_150 Hb_005288_150 Hb_011013_010--Hb_005288_150 Hb_001373_110 Hb_001373_110 Hb_011013_010--Hb_001373_110 Hb_004531_070 Hb_004531_070 Hb_011013_010--Hb_004531_070 Hb_003044_100 Hb_003044_100 Hb_000012_020--Hb_003044_100 Hb_000290_020 Hb_000290_020 Hb_000012_020--Hb_000290_020 Hb_000012_020--Hb_002639_150 Hb_000156_140 Hb_000156_140 Hb_000012_020--Hb_000156_140 Hb_074449_010 Hb_074449_010 Hb_001488_340--Hb_074449_010 Hb_001882_040 Hb_001882_040 Hb_001488_340--Hb_001882_040 Hb_000270_870 Hb_000270_870 Hb_001488_340--Hb_000270_870 Hb_001141_410 Hb_001141_410 Hb_001488_340--Hb_001141_410 Hb_000198_070 Hb_000198_070 Hb_001488_340--Hb_000198_070 Hb_035318_010 Hb_035318_010 Hb_001910_020--Hb_035318_010 Hb_000785_030 Hb_000785_030 Hb_001910_020--Hb_000785_030 Hb_152453_010 Hb_152453_010 Hb_001910_020--Hb_152453_010 Hb_003091_010 Hb_003091_010 Hb_001910_020--Hb_003091_010 Hb_073973_160 Hb_073973_160 Hb_001910_020--Hb_073973_160 Hb_001910_020--Hb_001882_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3098 5.9223 16.2341 8.99422 11.529 22.6281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.49189 8.2584 3.80369 2.52157 3.61938

CAGE analysis