Hb_005087_020

Information

Type -
Description -
Location Contig5087: 4404-4986
Sequence    

Annotation

kegg
ID rcu:RCOM_0852690
description Metalloendoproteinase 1 precursor, putative (EC:3.4.24.7)
nr
ID XP_002517411.1
description Metalloendoproteinase 1 precursor, putative [Ricinus communis]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9RUG6
description Metalloendoproteinase 1, putative OS=Ricinus communis GN=RCOM_0852690 PE=4 SV=1
Gene Ontology
ID GO:0008237
description matrixin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005087_020 0.0 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
2 Hb_003477_020 0.0570252804 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
3 Hb_151061_040 0.0597080101 - - putative retrotransposon protein [Phyllostachys edulis]
4 Hb_054839_010 0.0606445867 - - PsbC, partial (chloroplast) [Asimina parviflora]
5 Hb_000388_020 0.0681592247 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
6 Hb_000031_070 0.0735147 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
7 Hb_125153_010 0.0744598899 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
8 Hb_001790_110 0.0762393562 - - unknown [Populus trichocarpa]
9 Hb_001338_010 0.0764287748 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
10 Hb_072695_010 0.0780712111 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
11 Hb_007645_040 0.0793913179 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
12 Hb_004138_020 0.0819201942 - - PREDICTED: cucumisin-like [Populus euphratica]
13 Hb_001779_050 0.0848573963 - - polyprotein [Ananas comosus]
14 Hb_176140_010 0.0855148523 - - polyprotein [Oryza australiensis]
15 Hb_006302_050 0.0890809176 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
16 Hb_103255_010 0.0923288836 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_104509_010 0.0945116078 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
18 Hb_106850_010 0.0975274363 - - photosystem II protein D2 [Lactuca sativa]
19 Hb_007044_030 0.1011001474 - - Os06g0273400 [Oryza sativa Japonica Group]
20 Hb_131816_010 0.1028651512 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]

Gene co-expression network

sample Hb_005087_020 Hb_005087_020 Hb_003477_020 Hb_003477_020 Hb_005087_020--Hb_003477_020 Hb_151061_040 Hb_151061_040 Hb_005087_020--Hb_151061_040 Hb_054839_010 Hb_054839_010 Hb_005087_020--Hb_054839_010 Hb_000388_020 Hb_000388_020 Hb_005087_020--Hb_000388_020 Hb_000031_070 Hb_000031_070 Hb_005087_020--Hb_000031_070 Hb_125153_010 Hb_125153_010 Hb_005087_020--Hb_125153_010 Hb_004138_020 Hb_004138_020 Hb_003477_020--Hb_004138_020 Hb_007645_040 Hb_007645_040 Hb_003477_020--Hb_007645_040 Hb_003477_020--Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_003477_020--Hb_001338_010 Hb_001779_050 Hb_001779_050 Hb_003477_020--Hb_001779_050 Hb_151061_040--Hb_125153_010 Hb_151061_040--Hb_000031_070 Hb_151061_040--Hb_001338_010 Hb_151061_040--Hb_054839_010 Hb_151061_040--Hb_001779_050 Hb_054839_010--Hb_000388_020 Hb_054839_010--Hb_125153_010 Hb_006302_050 Hb_006302_050 Hb_054839_010--Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_054839_010--Hb_104509_010 Hb_000388_020--Hb_006302_050 Hb_000388_020--Hb_007645_040 Hb_000388_020--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_000388_020--Hb_106850_010 Hb_103255_010 Hb_103255_010 Hb_000388_020--Hb_103255_010 Hb_000031_070--Hb_001338_010 Hb_000031_070--Hb_001779_050 Hb_176140_010 Hb_176140_010 Hb_000031_070--Hb_176140_010 Hb_158575_010 Hb_158575_010 Hb_000031_070--Hb_158575_010 Hb_157680_010 Hb_157680_010 Hb_000031_070--Hb_157680_010 Hb_004453_120 Hb_004453_120 Hb_000031_070--Hb_004453_120 Hb_072695_010 Hb_072695_010 Hb_125153_010--Hb_072695_010 Hb_125153_010--Hb_000388_020 Hb_005914_030 Hb_005914_030 Hb_125153_010--Hb_005914_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0550479 0.0528252 0.481995 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 14.958

CAGE analysis