Hb_005092_070

Information

Type -
Description -
Location Contig5092: 67011-71506
Sequence    

Annotation

kegg
ID rcu:RCOM_0861300
description Oligopeptide transporter, putative
nr
ID XP_002522882.1
description Oligopeptide transporter, putative [Ricinus communis]
swissprot
ID O23482
description Oligopeptide transporter 3 OS=Arabidopsis thaliana GN=OPT3 PE=2 SV=3
trembl
ID B9SA63
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_0861300 PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46223: 66979-68825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005092_070 0.0 - - Oligopeptide transporter, putative [Ricinus communis]
2 Hb_000415_080 0.1153981422 - - -
3 Hb_002620_040 0.1244861414 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
4 Hb_003253_030 0.1250413475 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
5 Hb_040245_010 0.125111002 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
6 Hb_002081_140 0.1289922504 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000997_370 0.1318918054 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
8 Hb_004530_010 0.1338600014 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
9 Hb_102761_010 0.1367580379 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
10 Hb_054865_040 0.1372531755 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
11 Hb_001146_030 0.137544803 - - cytochrome P450, putative [Ricinus communis]
12 Hb_001085_200 0.1376796064 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
13 Hb_014510_030 0.1377288966 - - hypothetical protein VITISV_027576 [Vitis vinifera]
14 Hb_003073_030 0.1390507257 - - conserved hypothetical protein [Ricinus communis]
15 Hb_032016_010 0.1405527195 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
16 Hb_000254_080 0.1420664867 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
17 Hb_000627_110 0.1434916966 - - cellulose synthase, putative [Ricinus communis]
18 Hb_001295_080 0.1435470907 - - Protein KES1, putative [Ricinus communis]
19 Hb_000844_060 0.1437078505 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
20 Hb_000462_160 0.1461382891 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005092_070 Hb_005092_070 Hb_000415_080 Hb_000415_080 Hb_005092_070--Hb_000415_080 Hb_002620_040 Hb_002620_040 Hb_005092_070--Hb_002620_040 Hb_003253_030 Hb_003253_030 Hb_005092_070--Hb_003253_030 Hb_040245_010 Hb_040245_010 Hb_005092_070--Hb_040245_010 Hb_002081_140 Hb_002081_140 Hb_005092_070--Hb_002081_140 Hb_000997_370 Hb_000997_370 Hb_005092_070--Hb_000997_370 Hb_000415_080--Hb_040245_010 Hb_003073_030 Hb_003073_030 Hb_000415_080--Hb_003073_030 Hb_000627_110 Hb_000627_110 Hb_000415_080--Hb_000627_110 Hb_014510_030 Hb_014510_030 Hb_000415_080--Hb_014510_030 Hb_000199_090 Hb_000199_090 Hb_000415_080--Hb_000199_090 Hb_102761_010 Hb_102761_010 Hb_000415_080--Hb_102761_010 Hb_000462_160 Hb_000462_160 Hb_002620_040--Hb_000462_160 Hb_057880_020 Hb_057880_020 Hb_002620_040--Hb_057880_020 Hb_000139_030 Hb_000139_030 Hb_002620_040--Hb_000139_030 Hb_001295_080 Hb_001295_080 Hb_002620_040--Hb_001295_080 Hb_001459_020 Hb_001459_020 Hb_002620_040--Hb_001459_020 Hb_002188_150 Hb_002188_150 Hb_002620_040--Hb_002188_150 Hb_000844_060 Hb_000844_060 Hb_003253_030--Hb_000844_060 Hb_004329_030 Hb_004329_030 Hb_003253_030--Hb_004329_030 Hb_003622_050 Hb_003622_050 Hb_003253_030--Hb_003622_050 Hb_001085_200 Hb_001085_200 Hb_003253_030--Hb_001085_200 Hb_003253_030--Hb_002081_140 Hb_002600_110 Hb_002600_110 Hb_003253_030--Hb_002600_110 Hb_040245_010--Hb_003073_030 Hb_040245_010--Hb_014510_030 Hb_040245_010--Hb_000199_090 Hb_040245_010--Hb_000627_110 Hb_032016_010 Hb_032016_010 Hb_040245_010--Hb_032016_010 Hb_002081_140--Hb_004329_030 Hb_001051_020 Hb_001051_020 Hb_002081_140--Hb_001051_020 Hb_002081_140--Hb_000997_370 Hb_002675_220 Hb_002675_220 Hb_002081_140--Hb_002675_220 Hb_034299_010 Hb_034299_010 Hb_002081_140--Hb_034299_010 Hb_000254_080 Hb_000254_080 Hb_000997_370--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_000997_370--Hb_002119_150 Hb_004837_080 Hb_004837_080 Hb_000997_370--Hb_004837_080 Hb_000538_110 Hb_000538_110 Hb_000997_370--Hb_000538_110 Hb_029386_010 Hb_029386_010 Hb_000997_370--Hb_029386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.308989 3.73182 4.29731 21.1512 0.0571173 0.808722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120132 0.0540176 0.18031 6.63231 84.9608

CAGE analysis