Hb_005116_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5116: 29756-34505
Sequence    

Annotation

kegg
ID tcc:TCM_004403
description BHLH-like DNA binding protein
nr
ID XP_012092262.1
description PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
swissprot
ID E3SXU4
description Basic helix-loop-helix protein A OS=Pisum sativum GN=BHLH PE=3 SV=1
trembl
ID A0A067JCD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21943 PE=4 SV=1
Gene Ontology
ID GO:0046983
description basic helix-loop-helix protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46337: 29793-29939 , PASA_asmbl_46338: 30197-34478 , PASA_asmbl_46339: 32009-32515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_010 0.0 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
2 Hb_010334_040 0.0745614294 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
3 Hb_005010_040 0.0787973087 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
4 Hb_009627_040 0.0827621554 - - Lipase class 3-related protein, putative [Theobroma cacao]
5 Hb_009812_010 0.0853012192 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_010839_010 0.0927838257 - - receptor-kinase, putative [Ricinus communis]
7 Hb_005211_090 0.1087351038 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
8 Hb_056101_010 0.1120117712 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
9 Hb_009486_100 0.1127281636 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_006788_150 0.1133783531 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004128_090 0.1171845281 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
12 Hb_025526_010 0.1179950851 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
13 Hb_000684_490 0.1218142921 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
14 Hb_006970_100 0.1238952678 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_000011_120 0.126323162 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
16 Hb_003060_080 0.1268287746 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
17 Hb_002928_220 0.1276779065 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
18 Hb_003090_180 0.1277023762 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
19 Hb_007894_260 0.1279992693 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_001660_040 0.1295874942 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]

Gene co-expression network

sample Hb_005116_010 Hb_005116_010 Hb_010334_040 Hb_010334_040 Hb_005116_010--Hb_010334_040 Hb_005010_040 Hb_005010_040 Hb_005116_010--Hb_005010_040 Hb_009627_040 Hb_009627_040 Hb_005116_010--Hb_009627_040 Hb_009812_010 Hb_009812_010 Hb_005116_010--Hb_009812_010 Hb_010839_010 Hb_010839_010 Hb_005116_010--Hb_010839_010 Hb_005211_090 Hb_005211_090 Hb_005116_010--Hb_005211_090 Hb_000005_350 Hb_000005_350 Hb_010334_040--Hb_000005_350 Hb_000025_740 Hb_000025_740 Hb_010334_040--Hb_000025_740 Hb_000684_490 Hb_000684_490 Hb_010334_040--Hb_000684_490 Hb_000471_010 Hb_000471_010 Hb_010334_040--Hb_000471_010 Hb_010334_040--Hb_005010_040 Hb_005010_040--Hb_009627_040 Hb_006949_030 Hb_006949_030 Hb_005010_040--Hb_006949_030 Hb_000010_200 Hb_000010_200 Hb_005010_040--Hb_000010_200 Hb_002542_090 Hb_002542_090 Hb_005010_040--Hb_002542_090 Hb_009627_040--Hb_005211_090 Hb_000011_120 Hb_000011_120 Hb_009627_040--Hb_000011_120 Hb_004884_200 Hb_004884_200 Hb_009627_040--Hb_004884_200 Hb_002391_350 Hb_002391_350 Hb_009627_040--Hb_002391_350 Hb_009812_010--Hb_010839_010 Hb_004586_110 Hb_004586_110 Hb_009812_010--Hb_004586_110 Hb_004128_090 Hb_004128_090 Hb_009812_010--Hb_004128_090 Hb_004010_090 Hb_004010_090 Hb_009812_010--Hb_004010_090 Hb_009812_010--Hb_010334_040 Hb_010839_010--Hb_004128_090 Hb_010839_010--Hb_004010_090 Hb_029576_080 Hb_029576_080 Hb_010839_010--Hb_029576_080 Hb_010839_010--Hb_000011_120 Hb_001514_070 Hb_001514_070 Hb_005211_090--Hb_001514_070 Hb_005211_090--Hb_000011_120 Hb_005211_090--Hb_002391_350 Hb_005237_040 Hb_005237_040 Hb_005211_090--Hb_005237_040 Hb_001329_110 Hb_001329_110 Hb_005211_090--Hb_001329_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.2357 8.83294 7.35845 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0929854 0.0146336 0 54.5792 11.3721

CAGE analysis