Hb_005116_020

Information

Type -
Description -
Location Contig5116: 46530-58122
Sequence    

Annotation

kegg
ID atr:s00025p00038580
description AMTR_s00025p00038580; hypothetical protein
nr
ID XP_011079840.1
description PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
swissprot
ID Q8W4M7
description DNA repair helicase UVH6 OS=Arabidopsis thaliana GN=UVH6 PE=1 SV=1
trembl
ID S8CT90
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_06672 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna repair helicase uvh6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_020 0.0 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
2 Hb_002983_100 0.1430421461 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
3 Hb_134732_010 0.1532462387 - - -
4 Hb_003320_030 0.1679563091 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001159_210 0.1781298235 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
6 Hb_000038_150 0.1797970581 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
7 Hb_029866_010 0.190153168 - - -
8 Hb_001584_230 0.1937441234 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
9 Hb_033225_020 0.2026841212 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000123_390 0.2032248414 - - conserved hypothetical protein [Ricinus communis]
11 Hb_114868_010 0.2055377176 - - -
12 Hb_081636_010 0.2077334527 - - -
13 Hb_000236_270 0.209471062 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_013983_010 0.2100625458 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
15 Hb_010603_030 0.2164667957 - - -
16 Hb_043629_020 0.2179906369 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
17 Hb_005799_030 0.2182888306 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
18 Hb_000115_170 0.220321573 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
19 Hb_001135_270 0.2214599699 - - -
20 Hb_156144_020 0.2297646064 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]

Gene co-expression network

sample Hb_005116_020 Hb_005116_020 Hb_002983_100 Hb_002983_100 Hb_005116_020--Hb_002983_100 Hb_134732_010 Hb_134732_010 Hb_005116_020--Hb_134732_010 Hb_003320_030 Hb_003320_030 Hb_005116_020--Hb_003320_030 Hb_001159_210 Hb_001159_210 Hb_005116_020--Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_005116_020--Hb_000038_150 Hb_029866_010 Hb_029866_010 Hb_005116_020--Hb_029866_010 Hb_002983_100--Hb_003320_030 Hb_141838_010 Hb_141838_010 Hb_002983_100--Hb_141838_010 Hb_059126_010 Hb_059126_010 Hb_002983_100--Hb_059126_010 Hb_033225_020 Hb_033225_020 Hb_002983_100--Hb_033225_020 Hb_001125_030 Hb_001125_030 Hb_002983_100--Hb_001125_030 Hb_134732_010--Hb_000038_150 Hb_134732_010--Hb_001159_210 Hb_134732_010--Hb_003320_030 Hb_156144_020 Hb_156144_020 Hb_134732_010--Hb_156144_020 Hb_000200_060 Hb_000200_060 Hb_134732_010--Hb_000200_060 Hb_001329_260 Hb_001329_260 Hb_003320_030--Hb_001329_260 Hb_003320_030--Hb_001159_210 Hb_003320_030--Hb_000038_150 Hb_001159_210--Hb_000038_150 Hb_002326_060 Hb_002326_060 Hb_001159_210--Hb_002326_060 Hb_047661_010 Hb_047661_010 Hb_001159_210--Hb_047661_010 Hb_004460_020 Hb_004460_020 Hb_001159_210--Hb_004460_020 Hb_045502_010 Hb_045502_010 Hb_000038_150--Hb_045502_010 Hb_035360_010 Hb_035360_010 Hb_000038_150--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000038_150--Hb_000619_070 Hb_000038_150--Hb_004460_020 Hb_013983_010 Hb_013983_010 Hb_029866_010--Hb_013983_010 Hb_029866_010--Hb_001125_030 Hb_029866_010--Hb_033225_020 Hb_029866_010--Hb_059126_010 Hb_000345_480 Hb_000345_480 Hb_029866_010--Hb_000345_480 Hb_081636_010 Hb_081636_010 Hb_029866_010--Hb_081636_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63517 0.0997263 0.19681 0.125286 11.4984 4.04896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130221 0.460783 0.0928382 0.062112 0

CAGE analysis