Hb_005116_030

Information

Type -
Description -
Location Contig5116: 63305-65322
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23030g
description POPTRDRAFT_559543; hypothetical protein
nr
ID XP_012092258.1
description PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9H875
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23030g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46341: 64326-66413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_030 0.0 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
2 Hb_025163_020 0.1280795116 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
3 Hb_008215_020 0.1335526248 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_000069_650 0.1460392944 - - conserved hypothetical protein [Ricinus communis]
5 Hb_020301_020 0.1596109143 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_072201_010 0.1684250401 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
7 Hb_001950_090 0.1702069255 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
8 Hb_004531_060 0.1706275238 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
9 Hb_000422_040 0.172507972 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
10 Hb_000661_150 0.1732379647 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
11 Hb_000189_350 0.174098569 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
12 Hb_000890_140 0.1748119753 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
13 Hb_000856_390 0.1762228457 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002874_010 0.1778612696 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
15 Hb_001699_070 0.1785255709 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002311_090 0.179401625 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
17 Hb_010369_020 0.1803935047 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
18 Hb_033152_060 0.1811759973 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
19 Hb_074674_010 0.1812879337 - - Cell division cycle protein cdt2, putative [Ricinus communis]
20 Hb_023386_070 0.1814145826 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]

Gene co-expression network

sample Hb_005116_030 Hb_005116_030 Hb_025163_020 Hb_025163_020 Hb_005116_030--Hb_025163_020 Hb_008215_020 Hb_008215_020 Hb_005116_030--Hb_008215_020 Hb_000069_650 Hb_000069_650 Hb_005116_030--Hb_000069_650 Hb_020301_020 Hb_020301_020 Hb_005116_030--Hb_020301_020 Hb_072201_010 Hb_072201_010 Hb_005116_030--Hb_072201_010 Hb_001950_090 Hb_001950_090 Hb_005116_030--Hb_001950_090 Hb_025163_020--Hb_008215_020 Hb_004531_060 Hb_004531_060 Hb_025163_020--Hb_004531_060 Hb_005701_100 Hb_005701_100 Hb_025163_020--Hb_005701_100 Hb_000890_140 Hb_000890_140 Hb_025163_020--Hb_000890_140 Hb_000397_170 Hb_000397_170 Hb_025163_020--Hb_000397_170 Hb_008215_020--Hb_004531_060 Hb_008215_020--Hb_005701_100 Hb_185666_010 Hb_185666_010 Hb_008215_020--Hb_185666_010 Hb_008215_020--Hb_000069_650 Hb_000069_650--Hb_001950_090 Hb_001377_370 Hb_001377_370 Hb_000069_650--Hb_001377_370 Hb_003847_060 Hb_003847_060 Hb_000069_650--Hb_003847_060 Hb_001390_040 Hb_001390_040 Hb_000069_650--Hb_001390_040 Hb_000069_650--Hb_072201_010 Hb_001565_090 Hb_001565_090 Hb_000069_650--Hb_001565_090 Hb_000661_150 Hb_000661_150 Hb_020301_020--Hb_000661_150 Hb_005183_150 Hb_005183_150 Hb_020301_020--Hb_005183_150 Hb_001699_270 Hb_001699_270 Hb_020301_020--Hb_001699_270 Hb_007632_210 Hb_007632_210 Hb_020301_020--Hb_007632_210 Hb_000094_230 Hb_000094_230 Hb_020301_020--Hb_000094_230 Hb_005542_150 Hb_005542_150 Hb_020301_020--Hb_005542_150 Hb_012150_040 Hb_012150_040 Hb_072201_010--Hb_012150_040 Hb_072201_010--Hb_003847_060 Hb_072201_010--Hb_001950_090 Hb_021576_050 Hb_021576_050 Hb_072201_010--Hb_021576_050 Hb_000317_120 Hb_000317_120 Hb_072201_010--Hb_000317_120 Hb_001950_090--Hb_003847_060 Hb_001950_090--Hb_001699_270 Hb_000345_450 Hb_000345_450 Hb_001950_090--Hb_000345_450 Hb_001950_090--Hb_000317_120 Hb_006588_100 Hb_006588_100 Hb_001950_090--Hb_006588_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0366118 0.102701 1.8114 1.05486 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0670416 0 0 0.298667 0

CAGE analysis