Hb_005116_060

Information

Type -
Description -
Location Contig5116: 72918-86918
Sequence    

Annotation

kegg
ID rcu:RCOM_0558500
description rac-GTP binding protein, putative
nr
ID XP_012092252.1
description PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
swissprot
ID F4J0W4
description Mitochondrial Rho GTPase 2 OS=Arabidopsis thaliana GN=MIRO2 PE=2 SV=1
trembl
ID A0A067JC93
description Mitochondrial Rho GTPase OS=Jatropha curcas GN=JCGZ_21937 PE=3 SV=1
Gene Ontology
ID GO:0031307
description mitochondrial rho gtpase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46345: 73020-77654 , PASA_asmbl_46346: 74212-77654 , PASA_asmbl_46347: 86403-86914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_060 0.0 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
2 Hb_000340_400 0.0566869657 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_007035_050 0.0713520393 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
4 Hb_095296_010 0.0715382022 - - PREDICTED: syntaxin-32 [Jatropha curcas]
5 Hb_006478_040 0.0744434015 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
6 Hb_001030_020 0.0778774367 - - Poly(A) polymerase alpha, putative [Ricinus communis]
7 Hb_003001_080 0.0781575158 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
8 Hb_001221_110 0.0788710562 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
9 Hb_000886_050 0.0805644058 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
10 Hb_001359_050 0.081735163 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000738_020 0.0818700585 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000522_150 0.0824772499 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
13 Hb_000869_080 0.0832731425 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
14 Hb_001470_030 0.0841059986 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
15 Hb_000868_110 0.0845874349 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
16 Hb_006588_210 0.0855353818 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
17 Hb_000649_110 0.0859417133 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
18 Hb_000010_110 0.0864237741 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
19 Hb_005306_190 0.0879098553 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
20 Hb_000705_170 0.0883382761 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]

Gene co-expression network

sample Hb_005116_060 Hb_005116_060 Hb_000340_400 Hb_000340_400 Hb_005116_060--Hb_000340_400 Hb_007035_050 Hb_007035_050 Hb_005116_060--Hb_007035_050 Hb_095296_010 Hb_095296_010 Hb_005116_060--Hb_095296_010 Hb_006478_040 Hb_006478_040 Hb_005116_060--Hb_006478_040 Hb_001030_020 Hb_001030_020 Hb_005116_060--Hb_001030_020 Hb_003001_080 Hb_003001_080 Hb_005116_060--Hb_003001_080 Hb_004837_180 Hb_004837_180 Hb_000340_400--Hb_004837_180 Hb_000340_400--Hb_003001_080 Hb_000340_400--Hb_006478_040 Hb_000340_400--Hb_007035_050 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050 Hb_001396_200 Hb_001396_200 Hb_007035_050--Hb_001396_200 Hb_000318_250 Hb_000318_250 Hb_007035_050--Hb_000318_250 Hb_000886_050 Hb_000886_050 Hb_007035_050--Hb_000886_050 Hb_007765_110 Hb_007765_110 Hb_007035_050--Hb_007765_110 Hb_000868_110 Hb_000868_110 Hb_095296_010--Hb_000868_110 Hb_002073_200 Hb_002073_200 Hb_095296_010--Hb_002073_200 Hb_003020_270 Hb_003020_270 Hb_095296_010--Hb_003020_270 Hb_006816_350 Hb_006816_350 Hb_095296_010--Hb_006816_350 Hb_000869_080 Hb_000869_080 Hb_095296_010--Hb_000869_080 Hb_001546_080 Hb_001546_080 Hb_006478_040--Hb_001546_080 Hb_003030_060 Hb_003030_060 Hb_006478_040--Hb_003030_060 Hb_006478_040--Hb_000318_250 Hb_001470_030 Hb_001470_030 Hb_006478_040--Hb_001470_030 Hb_001030_020--Hb_001470_030 Hb_010423_030 Hb_010423_030 Hb_001030_020--Hb_010423_030 Hb_027380_050 Hb_027380_050 Hb_001030_020--Hb_027380_050 Hb_001245_100 Hb_001245_100 Hb_001030_020--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_001030_020--Hb_001163_050 Hb_001157_040 Hb_001157_040 Hb_001030_020--Hb_001157_040 Hb_003001_080--Hb_001163_050 Hb_152175_010 Hb_152175_010 Hb_003001_080--Hb_152175_010 Hb_008453_140 Hb_008453_140 Hb_003001_080--Hb_008453_140 Hb_003001_080--Hb_004837_180 Hb_032202_140 Hb_032202_140 Hb_003001_080--Hb_032202_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03061 7.52892 5.07943 4.28644 3.73249 4.07376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.00214 7.81521 3.63805 3.8363 3.34355

CAGE analysis