Hb_005116_090

Information

Type -
Description -
Location Contig5116: 122726-123637
Sequence    

Annotation

kegg
ID rcu:RCOM_0558280
description hypothetical protein
nr
ID XP_002520750.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SY06
description Protein FANTASTIC FOUR 1 OS=Arabidopsis thaliana GN=FAF1 PE=2 SV=1
trembl
ID B9S431
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0558280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000635_020 0.1200658986 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006816_240 0.1203399713 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
4 Hb_034713_010 0.1366626237 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
5 Hb_002228_120 0.1369095322 - - potassium channel beta, putative [Ricinus communis]
6 Hb_140627_040 0.1373471208 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
7 Hb_015292_020 0.1465319753 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_009367_070 0.1484970855 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
9 Hb_009662_040 0.1485450843 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
10 Hb_004705_060 0.1501345189 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
11 Hb_003544_080 0.1507442921 - - Protein HVA22, putative [Ricinus communis]
12 Hb_000413_120 0.1512999453 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
13 Hb_000236_210 0.1522065982 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
14 Hb_006088_020 0.1527151307 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_000333_140 0.1531818831 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_001213_060 0.1568401884 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
17 Hb_004112_080 0.1571678986 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
18 Hb_085829_010 0.1576325337 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
19 Hb_004319_010 0.1601876205 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
20 Hb_001673_090 0.1652808553 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]

Gene co-expression network

sample Hb_005116_090 Hb_005116_090 Hb_000635_020 Hb_000635_020 Hb_005116_090--Hb_000635_020 Hb_006816_240 Hb_006816_240 Hb_005116_090--Hb_006816_240 Hb_034713_010 Hb_034713_010 Hb_005116_090--Hb_034713_010 Hb_002228_120 Hb_002228_120 Hb_005116_090--Hb_002228_120 Hb_140627_040 Hb_140627_040 Hb_005116_090--Hb_140627_040 Hb_015292_020 Hb_015292_020 Hb_005116_090--Hb_015292_020 Hb_000236_210 Hb_000236_210 Hb_000635_020--Hb_000236_210 Hb_000635_020--Hb_006816_240 Hb_000635_020--Hb_140627_040 Hb_007100_010 Hb_007100_010 Hb_000635_020--Hb_007100_010 Hb_000635_020--Hb_002228_120 Hb_006816_240--Hb_000236_210 Hb_005843_020 Hb_005843_020 Hb_006816_240--Hb_005843_020 Hb_003544_080 Hb_003544_080 Hb_006816_240--Hb_003544_080 Hb_000997_080 Hb_000997_080 Hb_006816_240--Hb_000997_080 Hb_009367_070 Hb_009367_070 Hb_034713_010--Hb_009367_070 Hb_034713_010--Hb_140627_040 Hb_002304_110 Hb_002304_110 Hb_034713_010--Hb_002304_110 Hb_004705_060 Hb_004705_060 Hb_034713_010--Hb_004705_060 Hb_001898_030 Hb_001898_030 Hb_034713_010--Hb_001898_030 Hb_004112_080 Hb_004112_080 Hb_034713_010--Hb_004112_080 Hb_000413_120 Hb_000413_120 Hb_002228_120--Hb_000413_120 Hb_004933_010 Hb_004933_010 Hb_002228_120--Hb_004933_010 Hb_009662_040 Hb_009662_040 Hb_002228_120--Hb_009662_040 Hb_002228_120--Hb_009367_070 Hb_002228_120--Hb_034713_010 Hb_002228_120--Hb_140627_040 Hb_003680_240 Hb_003680_240 Hb_140627_040--Hb_003680_240 Hb_140627_040--Hb_009367_070 Hb_051212_020 Hb_051212_020 Hb_140627_040--Hb_051212_020 Hb_000207_060 Hb_000207_060 Hb_140627_040--Hb_000207_060 Hb_009062_020 Hb_009062_020 Hb_140627_040--Hb_009062_020 Hb_000333_140 Hb_000333_140 Hb_015292_020--Hb_000333_140 Hb_001709_120 Hb_001709_120 Hb_015292_020--Hb_001709_120 Hb_001025_130 Hb_001025_130 Hb_015292_020--Hb_001025_130 Hb_002902_060 Hb_002902_060 Hb_015292_020--Hb_002902_060 Hb_016911_010 Hb_016911_010 Hb_015292_020--Hb_016911_010 Hb_007122_020 Hb_007122_020 Hb_015292_020--Hb_007122_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111765 0.112055 1.29735 3.73978 0.0232584 0.0437664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113828 0 0 0.180427 0.363678

CAGE analysis