Hb_005116_100

Information

Type -
Description -
Location Contig5116: 127685-134451
Sequence    

Annotation

kegg
ID rcu:RCOM_0558170
description hypothetical protein
nr
ID XP_012092250.1
description PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
swissprot
ID P40983
description Uncharacterized protein in xynA 3'region (Fragment) OS=Caldicellulosiruptor sp. (strain Rt8B.4) PE=4 SV=1
trembl
ID A0A067JPJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21935 PE=4 SV=1
Gene Ontology
ID GO:0004789
description PREDICTED: uncharacterized protein LOC105649999

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46349: 127679-134423 , PASA_asmbl_46350: 127679-134190 , PASA_asmbl_46351: 127679-134190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_100 0.0 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
2 Hb_002005_040 0.0826878622 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_148146_010 0.0858431509 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
4 Hb_005618_080 0.0861692641 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
5 Hb_000402_020 0.0900626947 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_004055_160 0.0903074417 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
7 Hb_001649_030 0.0910270173 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
8 Hb_025194_090 0.0926725013 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
9 Hb_002928_030 0.0946755859 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
10 Hb_004223_270 0.0951989839 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
11 Hb_000684_430 0.0959759861 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
12 Hb_001959_060 0.0964414414 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
13 Hb_014361_110 0.1016231977 - - RNA binding protein, putative [Ricinus communis]
14 Hb_006829_080 0.1046292066 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
15 Hb_002044_160 0.1053008161 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
16 Hb_000264_280 0.1089040225 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
17 Hb_000358_040 0.1104079699 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
18 Hb_000005_100 0.1107099329 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
19 Hb_001269_500 0.1107426793 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
20 Hb_002232_380 0.1119971211 - - malate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005116_100 Hb_005116_100 Hb_002005_040 Hb_002005_040 Hb_005116_100--Hb_002005_040 Hb_148146_010 Hb_148146_010 Hb_005116_100--Hb_148146_010 Hb_005618_080 Hb_005618_080 Hb_005116_100--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_005116_100--Hb_000402_020 Hb_004055_160 Hb_004055_160 Hb_005116_100--Hb_004055_160 Hb_001649_030 Hb_001649_030 Hb_005116_100--Hb_001649_030 Hb_002005_040--Hb_004055_160 Hb_001348_090 Hb_001348_090 Hb_002005_040--Hb_001348_090 Hb_002044_160 Hb_002044_160 Hb_002005_040--Hb_002044_160 Hb_000684_430 Hb_000684_430 Hb_002005_040--Hb_000684_430 Hb_001269_500 Hb_001269_500 Hb_002005_040--Hb_001269_500 Hb_000056_310 Hb_000056_310 Hb_148146_010--Hb_000056_310 Hb_148146_010--Hb_000684_430 Hb_001959_060 Hb_001959_060 Hb_148146_010--Hb_001959_060 Hb_004837_210 Hb_004837_210 Hb_148146_010--Hb_004837_210 Hb_002928_030 Hb_002928_030 Hb_148146_010--Hb_002928_030 Hb_005618_080--Hb_001959_060 Hb_005618_080--Hb_000402_020 Hb_005618_080--Hb_000056_310 Hb_006829_080 Hb_006829_080 Hb_005618_080--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_005618_080--Hb_172632_060 Hb_000402_020--Hb_001959_060 Hb_003752_090 Hb_003752_090 Hb_000402_020--Hb_003752_090 Hb_000402_020--Hb_006829_080 Hb_000402_020--Hb_000056_310 Hb_004055_160--Hb_000684_430 Hb_009687_020 Hb_009687_020 Hb_004055_160--Hb_009687_020 Hb_004055_160--Hb_006829_080 Hb_004055_160--Hb_001348_090 Hb_001649_030--Hb_001269_500 Hb_001649_030--Hb_002928_030 Hb_000665_270 Hb_000665_270 Hb_001649_030--Hb_000665_270 Hb_001649_030--Hb_003752_090 Hb_000358_040 Hb_000358_040 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87797 4.79121 19.2353 7.27239 2.48262 2.43599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78466 2.86214 0.919936 4.69104 26.1773

CAGE analysis